Jatropha Genome Database
- JcCA0020841.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0020841.20 - phase: 0 /pseudo/partial
(249 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c01562 478 e-135
KJC_c05128 129 3e-30
KJC_c00678 105 5e-23
KJC_c00663 103 2e-22
KJC_c01967 94 2e-19
KJC_c01625 70 3e-12
KJC_c00750 70 3e-12
KJC_c00789 58 1e-08
>KJC_c01562
Length = 801
Score = 478 bits (241), Expect = e-135
Identities = 248/249 (99%), Gaps = 1/249 (0%)
Strand = Plus / Minus
Query: 1 ctctttcctcacaacatcaagaacagaatcgaccagctctgctccttcagtataatgccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ctctttcctcacaacatcaagaacagaatcgaccagctctgctccttcagtataatgccc 350
Query: 61 tttagcccagttattaccagccccattttggccaaaaacaaaattatcaggcctaaagat 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 349 tttagcccagttattaccagccccattttggccaaaa-caaaattatcaggcctaaagat 291
Query: 121 tttcccaaatggaccagttctcaagctatccatggtccctggctcaaggtctactaaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tttcccaaatggaccagttctcaagctatccatggtccctggctcaaggtctactaaaac 231
Query: 181 agctctggggacgtagcggccaccactggcctcgttatagtaaacattaaccctctcaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 agctctggggacgtagcggccaccactggcctcgttatagtaaacattaaccctctcaag 171
Query: 241 ttgaacttg 249
|||||||||
Sbjct: 170 ttgaacttg 162
>KJC_c05128
Length = 811
Score = 129 bits (65), Expect = 3e-30
Identities = 194/236 (82%), Gaps = 1/236 (0%)
Strand = Plus / Minus
Query: 11 acaacatcaagaacagaatcgaccagctctgctccttcagtataatgccctttagcccag 70
|||||||||||||||||||| | ||| ||||| ||||||||||||||||||||||||||
Sbjct: 344 acaacatcaagaacagaatcaatcagttctgcaccttcagtataatgccctttagcccaa 285
Query: 71 ttattaccagccccattttggccaaaaacaaaattatcaggcctaaagattttcccaaat 130
|| || ||||| ||| ||| || |||||||||||||| |||||||| || | || |
Sbjct: 284 ttgtttccagctccagattgaccgaaaacaaaattatctggcctaaaaatctgtccgtaa 225
Query: 131 ggaccagttctc-aagctatccatggtccctggctcaaggtctactaaaacagctctggg 189
|||||||||||| || ||||||||||| || || ||||| || | | |||||| || ||
Sbjct: 224 ggaccagttctcaaaactatccatggtgcccggttcaagatccataagaacagccctagg 165
Query: 190 gacgtagcggccaccactggcctcgttatagtaaacattaaccctctcaagttgaa 245
||| || | ||||||||| || ||||| || ||||||||||| || ||||| ||||
Sbjct: 164 gacatacctgccaccacttgcttcgttgtaataaacattaacnctttcaagctgaa 109
>KJC_c00678
Length = 1595
Score = 105 bits (53), Expect = 5e-23
Identities = 117/137 (85%), Gaps = 1/137 (0%)
Strand = Plus / Plus
Query: 1 ctctttcctcacaacatcaagaacagaatcgaccagctctgctccttcagtataatgccc 60
||||||||| ||||||||||| |||||||||| || ||| ||||||||||| ||||| ||
Sbjct: 1207 ctctttcctgacaacatcaagcacagaatcgatcaactcagctccttcagtgtaatgacc 1266
Query: 61 tttagcccagttattaccagccccattttggccaaaaacaaaattatcaggcctaaagat 120
||||||||||||||| || || ||| ||||||||||| | |||||||| ||||||||
Sbjct: 1267 tttagcccagttattccctgctccagactggccaaaaac-gagttatcaggtctaaagat 1325
Query: 121 tttcccaaatggaccag 137
| |||||| |||||||
Sbjct: 1326 ctgcccaaagggaccag 1342
>KJC_c00663
Length = 1634
Score = 103 bits (52), Expect = 2e-22
Identities = 136/164 (82%)
Strand = Plus / Minus
Query: 5 ttcctcacaacatcaagaacagaatcgaccagctctgctccttcagtataatgcccttta 64
|||| ||||||||| | ||| | ||| | |||||| ||||| |||||||||||||| ||
Sbjct: 482 ttccgcacaacatccaaaaccgcatcaatcagctcagctccctcagtataatgccccttg 423
Query: 65 gcccagttattaccagccccattttggccaaaaacaaaattatcaggcctaaagattttc 124
||||||||||| ||||| ||| ||| ||||| ||||| ||||||||||||||||| |
Sbjct: 422 gcccagttatttccagcaccagattgcccaaacacaaagttatcaggcctaaagatctga 363
Query: 125 ccaaatggaccagttctcaagctatccatggtccctggctcaag 168
||| |||||||||| |||| || |||||||| || ||||||||
Sbjct: 362 ccatatggaccagtcctcacactgtccatggtaccaggctcaag 319
>KJC_c01967
Length = 690
Score = 93.7 bits (47), Expect = 2e-19
Identities = 92/107 (85%)
Strand = Plus / Minus
Query: 11 acaacatcaagaacagaatcgaccagctctgctccttcagtataatgccctttagcccag 70
||||||||||| |||||||| | |||||||| |||||||| ||||| ||||||||||||
Sbjct: 406 acaacatcaagcacagaatcaatgagctctgcgccttcagtgtaatggcctttagcccag 347
Query: 71 ttattaccagccccattttggccaaaaacaaaattatcaggcctaaa 117
|| |||||||| ||| ||||||||| || || |||||||| |||||
Sbjct: 346 ttgttaccagcaccagattggccaaagacgaagttatcaggtctaaa 300
>KJC_c01625
Length = 1438
Score = 69.9 bits (35), Expect = 3e-12
Identities = 90/107 (84%), Gaps = 1/107 (0%)
Strand = Plus / Minus
Query: 11 acaacatcaagaacagaatcgaccagctctgctccttcagtataatgccctttagcccag 70
|||||||||||||| | ||| | ||||| || |||||||| ||||| || |||||||||
Sbjct: 329 acaacatcaagaaccgcatcaataagctcagcaccttcagtgtaatggcccttagcccag 270
Query: 71 ttattaccagccccattttggccaaaaacaaaattatcaggcctaaa 117
||||||||||| ||| ||| |||||||| |||||||||| |||||
Sbjct: 269 ttattaccagcaccagattgtccaaaaac-gaattatcaggtctaaa 224
>KJC_c00750
Length = 1536
Score = 69.9 bits (35), Expect = 3e-12
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 11 acaacatcaagaacagaatcgaccagctctgctccttcagtataatgccctttagcccag 70
|||||||| ||||||| ||||| || ||| ||||| ||||||||||| ||||| |||||
Sbjct: 523 acaacatcgagaacagcatcgatcaactcggctccctcagtataatgacctttggcccaa 464
Query: 71 ttattaccagc 81
|||||||||||
Sbjct: 463 ttattaccagc 453
>KJC_c00789
Length = 1481
Score = 58.0 bits (29), Expect = 1e-08
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 5 ttcctcacaacatcaagaacagaatcgaccagctctgctccttcagtataatgcccttta 64
||||||||||||||||| || || || | || || ||||| || ||||||||||| ||
Sbjct: 445 ttcctcacaacatcaaggacggagtcaatcaattcagctccctctgtataatgccccttg 386
Query: 65 gcccagttattaccagc 81
|||||||||||||||||
Sbjct: 385 gcccagttattaccagc 369