Jatropha Genome Database

JcCA0020601.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0020601.30 - phase: 0 /partial
         (447 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04869                                                            234   1e-61
KJC_c02084                                                            101   1e-21

>KJC_c04869 
          Length = 1067

 Score =  234 bits (118), Expect = 1e-61
 Identities = 125/126 (99%), Gaps = 1/126 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctcagatgtgctaggcagcttggtgattttctgctcgttgggattcacactgaccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 attctcagatgtgctaggcagcttggtgattttctgctcgttgggattcacactgaccaa 67

                                                                       
Query: 61  attgtgagtgaacacagagggaagaac-tacccaattatgcatctacatgagcgtagttt 119
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 66  attgtgagtgaacacagagggaagaacgtacccaattatgcatctacatgagcgtagttt 7

                 
Query: 120 aagtgt 125
           ||||||
Sbjct: 6   aagtgt 1


>KJC_c02084 
          Length = 643

 Score =  101 bits (51), Expect = 1e-21
 Identities = 111/131 (84%)
 Strand = Plus / Plus

                                                                       
Query: 94  attatgcatctacatgagcgtagtttaagtgtgctggcttgccgttatgtggatgaagtc 153
           |||||| |||| |||||  | ||||| |||||  ||||||| || ||||||||||| || 
Sbjct: 145 attatgaatcttcatgaaagaagtttgagtgttttggcttgtcgatatgtggatgaggtg 204

                                                                       
Query: 154 atcattggtgccccttgggaagtttctaaagacatgattacaactttcaacatctctttg 213
           || |||||||| || ||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct: 205 ataattggtgctccatgggaagtttctaaagacatgataacaacctttaacatctctttg 264

                      
Query: 214 gttgttcatgg 224
           || || |||||
Sbjct: 265 gtagtacatgg 275