Jatropha Genome Database

JcCA0019701.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0019701.10 + phase: 0 
         (420 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c03789                                                            684   0.0  

>KJC_c03789 
          Length = 673

 Score =  684 bits (345), Expect = 0.0
 Identities = 376/384 (97%), Gaps = 3/384 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgagttccggaggatcaaccaagggaggcagaggcaagccgaagtcatcaaaatcggtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19  atgagttccggaggatcaaccaagggaggcagaggcaagccgaagtcatcaaaatcggtt 78

                                                                       
Query: 61  tccagatctcaaaaggctggtctccagtttcccgtcggtcgtatcgcccgttttctcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79  tccagatctcaaaaggctggtctccagtttcccgtcggtcgtatcgcccgttttctcaaa 138

                                                                       
Query: 121 gctggaaagtacgccgatcgcgtcggtgctggcgcccccgtttatctctccgctgtcctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 gctggaaagtacgccgatcgcgtcggtgctggcgcccccgtttatctctccgctgtcctc 198

                                                                       
Query: 181 gagtacctcgctgctgaggttcttgaacttgctggcaatgctgctagggacaacaagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 gagtacctcgctgctgaggttcttgaacttgctggcaatgctgctagggacaacaagaaa 258

                                                                       
Query: 241 aaccgtatcgtcccaaggcacattcagcttgctgtgaggaatgatgaagagcttagcaag 300
           ||||||||||||||||||||||  |||   | |  |||||||||||||||||||||||||
Sbjct: 259 aaccgtatcgtcccaaggcaca--cag-gggataggaggaatgatgaagagcttagcaag 315

                                                                       
Query: 301 ctcttgggaactgttactattgcaaatgggggtgttttgccaaatatccatcaaaatctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ctcttgggaactgttactattgcaaatgggggtgttttgccaaatatccatcaaaatctg 375

                                   
Query: 361 ttgccaaagaaaatggggaaaggg 384
           ||||||||||||||||||||||||
Sbjct: 376 ttgccaaagaaaatggggaaaggg 399