Jatropha Genome Database

JcCA0018861.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0018861.10 - phase: 0 /pseudo/partial
         (2244 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c10764                                                            904   0.0  

>KJC_c10764 
          Length = 476

 Score =  904 bits (456), Expect = 0.0
 Identities = 473/476 (99%), Gaps = 2/476 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1380 gtgctttggccgttacgatacacgtgaacacagagtgggtgactgccctcctcttctctg 1439
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476  gtgctttggccgttacgatacacgtgaacacagagtgggtgactgccctcctcttctctg 417

                                                                        
Query: 1440 g-cctggaaaggactattataatccaagggagtctgaaccaaattcatgggaagatacaa 1498
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416  gacctggaaaggactattataatccaagggagtctgaaccaaattcatgggaagatacaa 357

                                                                        
Query: 1499 tgaaagatgaactggatcgtagaaaatatcctcgaatgccttggcatgatgtgcactgtg 1558
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356  tgaaagatgaactggatcgtagaaaatatcctcgaatgccttggcatgatgtgcactgtg 297

                                                                        
Query: 1559 ccctatgggg-accctcatgtcgggatatagctagacattttgttcagcgttggaactat 1617
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296  ccctatgggggaccctcatgtcgggatatagctagacattttgttcagcgttggaactat 237

                                                                        
Query: 1618 gcaaagagaaataaagctccttatgaggaagcaatcccactgcttatgcctcagcagcac 1677
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236  gcaaagagaaataaagctccttatgaggaagcaatcccactgcttatgcctcagcagcac 177

                                                                        
Query: 1678 atggttattccacactataggggaagcagcagagagttggaggctgaaattacggatgtt 1737
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176  atggttattccacactataggggaagcagcagagagttggaggctgaaattacggatgtt 117

                                                                        
Query: 1738 gaagatgattctaaagtaattaaaaggcaggattccttttcctctagatcatcttcacaa 1797
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116  gaagatgattctaaagtaattaaaaggcaggattccttttcctctagatcatcttcacaa 57

                                                                    
Query: 1798 gatatccccctgcttttgcctcaagaagctgaagggctagatgattctgacggagg 1853
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 56   gatatccccctgcttttgcctcaagaagctgaagggctagatgattctgatggagg 1