Jatropha Genome Database

JcCA0015401.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0015401.20 - phase: 0 /partial
         (774 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04735                                                             66   1e-10

>KJC_c04735 
          Length = 1528

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 192/245 (78%)
 Strand = Plus / Minus

                                                                       
Query: 259 tgtcgaaaggtttatgctcatgcgcacgattttaatatcaactctatctctaataatagt 318
           ||||||| ||| ||||||||||| || |||| | | ||||| || || || || || |||
Sbjct: 841 tgtcgaagggtatatgctcatgcacatgattatcacatcaattcaatttcaaacaacagt 782

                                                                       
Query: 319 gatggtgagacatttatttctgcagacgaccttcgaataaatttatggaaccttgagatc 378
           |||||||| || ||||| || || || ||||| ||||| ||  | |||||| | || || 
Sbjct: 781 gatggtgaaacctttatatcggctgatgacctgcgaatcaacctttggaacttggaaatt 722

                                                                       
Query: 379 agcaatcagtgtttcaatatcattgacatgaaacctgcaaacatggaggatcttaccgag 438
           ||||||||  ||||||||||  ||||  | || || ||||| ||||||||||| || |||
Sbjct: 721 agcaatcaaagtttcaatattgttgatgtaaagccagcaaatatggaggatctaactgag 662

                                                                       
Query: 439 gtcataacatcagctgaattccatccaatctactgtaatatgcttgcatacagcagctca 498
           || |||||||| || |||||||| || | | |||| |||||| | ||||| ||||| || 
Sbjct: 661 gttataacatctgcagaattccaccccaaccactgcaatatgttagcatatagcagttcg 602

                
Query: 499 agagg 503
           |||||
Sbjct: 601 agagg 597