Jatropha Genome Database

JcCA0015371.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0015371.10 + phase: 0 
         (1320 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04580                                                             76   2e-13
KJC_c09795                                                             58   6e-08

>KJC_c04580 
          Length = 623

 Score = 75.8 bits (38), Expect = 2e-13
 Identities = 138/170 (81%), Gaps = 1/170 (0%)
 Strand = Plus / Plus

                                                                       
Query: 89  gttgtagtagacctcgcttggctggtactggaagactatcttacaactatcttgatatag 148
           |||| ||||||||||  || |||||| ||| |||||| || ||||| ||| | ||| |||
Sbjct: 398 gttgcagtagacctccattagctggtgctgcaagactttcatacaattatttagatgtag 457

                                                                       
Query: 149 cttttacaccttatggagattactggagagaaataaaaaagatttgtgttcttga-actt 207
           ||||| |||| ||||| |||||||||||||| || |  |  || |||||||||||  |||
Sbjct: 458 ctttttcaccatatggtgattactggagagagattaggagaatatgtgttcttgagtctt 517

                                                             
Query: 208 tttagtgctaaaagagttcaatcgtttcaatccgttagagaagaagaagt 257
           |||||  | ||||| || || |||||||| | ||||||||||||||||||
Sbjct: 518 tttagcacgaaaagggtgcagtcgtttcagttcgttagagaagaagaagt 567


>KJC_c09795 
          Length = 468

 Score = 58.0 bits (29), Expect = 6e-08
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                        
Query: 1036 gaagaattctttccagagagatttattgataactccattgattttagagggcaaaattat 1095
            ||||||||||| || || |||||| | |||| |||||||||||||| ||| ||||||| |
Sbjct: 293  gaagaattcttccctgaaagatttgtggatagctccattgattttaaaggacaaaatttt 234

                             
Query: 1096 gaatttttaccatttgg 1112
            || ||| | ||||||||
Sbjct: 233  gagtttctgccatttgg 217