Jatropha Genome Database

JcCA0013701.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0013701.10 + phase: 0 /pseudo/partial
         (822 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c09092                                                            115   2e-25

>KJC_c09092 
          Length = 775

 Score =  115 bits (58), Expect = 2e-25
 Identities = 224/278 (80%), Gaps = 1/278 (0%)
 Strand = Plus / Plus

                                                                       
Query: 478 ttggacctccggctgactgggtgaagatcaatgtgcaaagaactaatgactgctttgaaa 537
           |||||||||| ||||| ||||| |||||||||||  | | ||| || || ||||||||  
Sbjct: 224 ttggacctccagctgagtgggtaaagatcaatgtagaga-aacaaaagattgctttgagg 282

                                                                       
Query: 538 tatatgctttagttccagggcttcttcgtgaggaggtgcatgttcaatctgatccagcag 597
           |||||||| |||| || || |||||||| |||||||| | ||||||||| ||||||||||
Sbjct: 283 tatatgctctagtaccgggacttcttcgcgaggaggtacgtgttcaatcagatccagcag 342

                                                                       
Query: 598 gacgcttgattatatcgggtcaaccagagcaactggataatccttggggtgtcacaccat 657
           |||| ||  ||||    ||| |||| ||| | |  ||||||||||||||||||||||| |
Sbjct: 343 gacgattagttattagtggtgaacctgagtatcccgataatccttggggtgtcacaccct 402

                                                                       
Query: 658 ttaaaaaggttgtcagtttaccttcacgaattgatccacatcagacatctgctgtggtca 717
           | | ||||||||| || ||||| ||| | || || || |||||||| || ||||| ||||
Sbjct: 403 tcagaaaggttgtgagcttaccctcaaggatcgacccgcatcagacttcagctgtagtca 462

                                                 
Query: 718 ccctgcatggccaattatttgtgcgtgtcccgtttgaa 755
           |||| ||||| ||| | ||||| || ||||| ||||||
Sbjct: 463 cccttcatggacaactgtttgttcgagtcccatttgaa 500



 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                       
Query: 258 cgtgccatgcagggatggcactctcagcgtcttctcggtaatggtcaggtttgtgatcca 317
           ||||| |||||||| |||||||| ||||||||||| ||||||||  | ||| |||| || 
Sbjct: 2   cgtgctatgcagggttggcactcgcagcgtcttcttggtaatggagaagttagtgaccct 61

                         
Query: 318 atcattaaggataa 331
           ||||||||||||||
Sbjct: 62  atcattaaggataa 75