Jatropha Genome Database

JcCA0012121.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0012121.20 - phase: 0 /partial
         (531 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c03835                                                            547   e-156

>KJC_c03835 
          Length = 766

 Score =  547 bits (276), Expect = e-156
 Identities = 276/276 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtcatgaagtagatgcatttggagtaggcaccaacctagtcacttgttttgctcaagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ggtcatgaagtagatgcatttggagtaggcaccaacctagtcacttgttttgctcaagct 217

                                                                       
Query: 61  gctttgggctgtgtcttcaagcttgttgagataaacaatcagcctcgcataaaactttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gctttgggctgtgtcttcaagcttgttgagataaacaatcagcctcgcataaaactttct 157

                                                                       
Query: 121 gaagatgtttctaaggtctccataccttgtaaaaaacggagttatcggttgtatggcaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 gaagatgtttctaaggtctccataccttgtaaaaaacggagttatcggttgtatggcaag 97

                                                                       
Query: 181 gaaggctaccctctggtggacataatgactggggaaaatgaaccatctccgaaggtggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  gaaggctaccctctggtggacataatgactggggaaaatgaaccatctccgaaggtggga 37

                                               
Query: 241 gaacggatattatgtcgccatccctttaatgaatcc 276
           ||||||||||||||||||||||||||||||||||||
Sbjct: 36  gaacggatattatgtcgccatccctttaatgaatcc 1