Jatropha Genome Database

JcCA0011552.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0011552.10 - phase: 0 /pseudo/partial
         (668 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00779                                                            632   0.0  
KJC_s13773                                                             62   2e-09

>KJC_c00779 
          Length = 1289

 Score =  632 bits (319), Expect = 0.0
 Identities = 319/319 (100%)
 Strand = Plus / Plus

                                                                       
Query: 243 tgagattgtcagacagattggggatgctttgcgagtaaagcttcagcagcttggttgtct 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tgagattgtcagacagattggggatgctttgcgagtaaagcttcagcagcttggttgtct 60

                                                                       
Query: 303 tgtctcacttgagatgggaaaaatacttcctgaaggcataggggaagttcaagaaatcat 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tgtctcacttgagatgggaaaaatacttcctgaaggcataggggaagttcaagaaatcat 120

                                                                       
Query: 363 tgatatgtgtgattttgctgttgggttaagccgacaactgaatggatcaataataccttc 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgatatgtgtgattttgctgttgggttaagccgacaactgaatggatcaataataccttc 180

                                                                       
Query: 423 agaacgcccaaatcatgtgatgttggagacatggaatcctctaggaatagttggtgtcat 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agaacgcccaaatcatgtgatgttggagacatggaatcctctaggaatagttggtgtcat 240

                                                                       
Query: 483 cacagctttcaacttcccatgcgctgttcttggatggaacgcatgcattgccttggtctg 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cacagctttcaacttcccatgcgctgttcttggatggaacgcatgcattgccttggtctg 300

                              
Query: 543 tggcaattgtgtggtttgg 561
           |||||||||||||||||||
Sbjct: 301 tggcaattgtgtggtttgg 319


>KJC_s13773 
          Length = 159

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 531 tgccttggtctgtggcaattgtgtggtttgg 561
           |||||||||||||||||||||||||||||||
Sbjct: 146 tgccttggtctgtggcaattgtgtggtttgg 116