Jatropha Genome Database

JcCA0009771.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0009771.20 - phase: 0 
         (1059 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c09906                                                            436   e-122

>KJC_c09906 
          Length = 371

 Score =  436 bits (220), Expect = e-122
 Identities = 227/228 (99%), Gaps = 1/228 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggaggcggagaatggaacgaatttcacttacatggggaggagcttcggaaatacgaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 atggaggcggagaatggaacgaatttcacttacatggggaggagcttcggaaatacgaat 204

                                                                       
Query: 61  gtaaacgatgattcctctgctttcagcgactgcaatagtgacagatccggcgagttcccg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gtaaacgatgattcctctgctttcagcgactgcaatagtgacagatccggcgagttcccg 264

                                                                       
Query: 121 acggcgtcttctgagagccggcgattatttctagcctgcacatcagagaactcagatgat 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 265 acggcgtcttctgagagccggcgatta-ttctagcctgcacatcagagaactcagatgat 323

                                                           
Query: 181 ctgattcgccagctcgtattggatcttgacgcctgttcgattgatgag 228
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctgattcgccagctcgtattggatcttgacgcctgttcgattgatgag 371