Jatropha Genome Database

JcCA0006671.50
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0006671.50 + phase: 0 
         (603 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c08998                                                             96   1e-19
KJC_c00983                                                             56   1e-07

>KJC_c08998 
          Length = 537

 Score = 95.6 bits (48), Expect = 1e-19
 Identities = 153/188 (81%)
 Strand = Plus / Plus

                                                                       
Query: 64  ggaaaaaccagtttggtactaagatttgtcaagggtcaattcttcgatcatcaggaacca 123
           ||||| || ||||||||| | ||||||||||| || ||||| || |||   |||||| ||
Sbjct: 1   ggaaagacaagtttggtattgagatttgtcaaaggccaattttttgatttccaggaatca 60

                                                                       
Query: 124 accataggagcagcatttttcacacaaatattatcattagctgaagcaactctcaaattt 183
           || || |||||||| |||||||| ||  |  ||||||||   || || ||  | ||||||
Sbjct: 61  acaattggagcagcctttttcactcaggttctatcattaaacgaggccaccataaaattt 120

                                                                       
Query: 184 gatatatgggacacagcaggacaagaaagataccatagcttggctcctatgtattatcgc 243
           |||||||||||||||||||| || |||||||||||||| ||||| || ||||| ||||||
Sbjct: 121 gatatatgggacacagcagggcaggaaagataccatagtttggcacccatgtactatcgc 180

                   
Query: 244 ggggcagc 251
           || |||||
Sbjct: 181 ggtgcagc 188


>KJC_c00983 
          Length = 973

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 58/68 (85%)
 Strand = Plus / Minus

                                                                       
Query: 169 gcaactctcaaatttgatatatgggacacagcaggacaagaaagataccatagcttggct 228
           |||||| | |||||||| || ||||||||||| || ||||| || || ||||||||||||
Sbjct: 627 gcaactgtaaaatttgaaatttgggacacagccggtcaagagaggtatcatagcttggct 568

                   
Query: 229 cctatgta 236
           || |||||
Sbjct: 567 ccaatgta 560