Jatropha Genome Database
- JcCA0003732.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0003732.20 + phase: 0
(822 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c11743 224 3e-58
KJC_c04274 224 3e-58
>KJC_c11743
Length = 284
Score = 224 bits (113), Expect = 3e-58
Identities = 210/241 (87%), Gaps = 1/241 (0%)
Strand = Plus / Minus
Query: 579 ggatgatgagcttaagcagctttttcggggggttgaattggctcatgatatgctcgatat 638
||||||||| ||||||||||| ||| ||||| |||||||| ||| ||||||||| || ||
Sbjct: 284 ggatgatgatcttaagcagctctttagggggattgaattgcctcgtgatatgcttgacat 225
Query: 639 tgagagggatctaataaagaatggcatgaagcccgctacagacaccgcgaagaggagggc 698
||| | ||||||| ||||||||||||||||| || ||| |||| || |||||||| ||
Sbjct: 224 tgaaaaggatctacagaagaatggcatgaagcctgccacaaacacagcaaagaggagagc 165
Query: 699 tgctgcccaggtgcagggcatttcctccaagccaaagaacaagaagaagaagcatgagat 758
|| |||||||| |||||| |||||||||||||||||| |||||||||||||||||| ||
Sbjct: 164 agcagcccaggtacagggcgtttcctccaagccaaagaccaagaagaagaagcatgaaat 105
Query: 759 cagcaagaggactaagctaacaaatgctcatcttcc-tgaactttttcgaaaccttggtt 817
|||||||||||||||||| |||||||| |||||||| |||||||||| ||| |||||||
Sbjct: 104 cagcaagaggactaagcttacaaatgcacatcttccgggaactttttcaaaatcttggtt 45
Query: 818 c 818
|
Sbjct: 44 c 44
>KJC_c04274
Length = 594
Score = 224 bits (113), Expect = 3e-58
Identities = 266/317 (83%)
Strand = Plus / Plus
Query: 244 gcttttacaccagaacaaataaatgacgcttgttttgttgatgtcaagtccaataaaact 303
|||| ||||||||||||||||||||| || |||| ||||||||| | || || || |
Sbjct: 278 gcttatacaccagaacaaataaatgaggcatgttatgttgatgtgacctcaaacaaggca 337
Query: 304 gtctttgacagtttgaggaacaacccaaaagttaattatgatgggaggtgcttctcctac 363
|| |||||||||||||||||||| |||||||| | ||||||||| | | |||| || |||
Sbjct: 338 gtttttgacagtttgaggaacaatccaaaagtgacttatgatggaaagcgcttttcttac 397
Query: 364 aagtcaaagcatgatttgaaggacaagaaccaattactctccttgatatgcaagtttcca 423
||||| ||||||||||| |||||||||| ||| |||| ||||||| | || | |||
Sbjct: 398 aagtccaagcatgatttaaaggacaagagtcaactacttgtcttgatacggaaatatcct 457
Query: 424 gaaggcattgccactattgatctcaaggatgcatacccagctgtgacggaggatttacag 483
|| |||||||| |||||||||||||||||||||||| | || | |||||||||||||
Sbjct: 458 gagggcattgctgtcattgatctcaaggatgcatacccaacagttatggaggatttacag 517
Query: 484 gcgttgaaagctgctggcaagatttggctgctatcgaactatgattcacaggaggacatt 543
|| |||||||||||||| | |||||| ||||||| |||| |||||||||||||||||||
Sbjct: 518 gctttgaaagctgctggacaaatttggttgctatcaaactttgattcacaggaggacatt 577
Query: 544 gcatatccaaacgaccc 560
|||||||| ||||||||
Sbjct: 578 gcatatcctaacgaccc 594
Score = 141 bits (71), Expect = 3e-33
Identities = 92/99 (92%)
Strand = Plus / Plus
Query: 129 aacaaatactagaactccaggtccacctgtcaaattttcaaatgacacagagagactcca 188
||||||| | || ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 139 aacaaatccaaggactccaggtccacctgtcaaattttcaaatgacacggagagactcca 198
Query: 189 acacatcaacagtattcgaaaagctcctgttggagctca 227
|||||||||||| ||||||||||| |||||||| |||||
Sbjct: 199 acacatcaacagcattcgaaaagcgcctgttggtgctca 237