Jatropha Genome Database
- JcCA0000051.40
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0000051.40 - phase: 0 /partial
(528 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c00048 1005 0.0
KJC_c00393 815 0.0
KJC_s16623 404 e-113
KJC_s14410 274 2e-73
KJC_s17139 145 1e-34
KJC_s14742 88 2e-17
>KJC_c00048
Length = 4253
Score = 1005 bits (507), Expect = 0.0
Identities = 521/528 (98%)
Strand = Plus / Minus
Query: 1 atatcatcatctacacccagaaagccgtatgctttggaagaagcttgtacagtttgggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2791 atatcatcatctacacccagaaagccgtatgctttggaagaagcttgtacagtttgggaa 2732
Query: 61 gaggttttgattgatcaaaaagaagaatctacttcaaccgatatgcccttaggcacggcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2731 gaggttttgattgatcaaaaagaagaatctacttcaaccgatatgcccttaggcacggcc 2672
Query: 121 atacataacatagaaatcacacttggaaagggtggacaattagctagagctgcaggtgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2671 atacataacatagaaatcacacttggaaagggtggacaattagctagagctgcaggtgct 2612
Query: 181 gtagcgaaactgattgcaaaagaggggaaatcggccacattaaaattaccttctggggag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2611 gtagcgaaactgattgcaaaagaggggaaatcggccacattaaaattaccttctggggag 2552
Query: 241 gttcgtttaatatccaaaaactgctcagcaacagtcggacaagtaggcaatactggggtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2551 gttcgtttaatatccaaaaactgctcagcaacagtcggacaagtaggcaatactggggtg 2492
Query: 301 aaccagaaaagtttgggtagagccggatctaaatgttggctaggtaagcgtcctgtagta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2491 aaccagaaaagtttgggtagagccggatctaaatgttggctaggtaagcgtcctgtagta 2432
Query: 361 agaggagtagttatgaaccctgtagaccatccccatgggggtggtgaagggagggcccca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2431 agaggagtagttatgaaccctgtagaccatccccatgggggtggtgaagggagggcccca 2372
Query: 421 attggtagnnnnnnncccgcaaccccttgggggtatcctgcacttggaagaagaagtaga 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2371 attggtagaaaaaaacccgcaaccccttgggggtatcctgcacttggaagaagaagtaga 2312
Query: 481 aaaaggaataaatatagtgataatttgattcttcgtcgccgtactaag 528
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2311 aaaaggaataaatatagtgataatttgattcttcgtcgccgtactaag 2264
>KJC_c00393
Length = 954
Score = 815 bits (411), Expect = 0.0
Identities = 425/432 (98%)
Strand = Plus / Minus
Query: 97 accgatatgcccttaggcacggccatacataacatagaaatcacacttggaaagggtgga 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 accgatatgcccttaggcacggccatacataacatagaaatcacacttggaaagggtgga 416
Query: 157 caattagctagagctgcaggtgctgtagcgaaactgattgcaaaagaggggaaatcggcc 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 caattagctagagctgcaggtgctgtagcgaaactgattgcaaaagaggggaaatcggcc 356
Query: 217 acattaaaattaccttctggggaggttcgtttaatatccaaaaactgctcagcaacagtc 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 acattaaaattaccttctggggaggttcgtttaatatccaaaaactgctcagcaacagtc 296
Query: 277 ggacaagtaggcaatactggggtgaaccagaaaagtttgggtagagccggatctaaatgt 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ggacaagtaggcaatactggggtgaaccagaaaagtttgggtagagccggatctaaatgt 236
Query: 337 tggctaggtaagcgtcctgtagtaagaggagtagttatgaaccctgtagaccatccccat 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 tggctaggtaagcgtcctgtagtaagaggagtagttatgaaccctgtagaccatccccat 176
Query: 397 gggggtggtgaagggagggccccaattggtagnnnnnnncccgcaaccccttgggggtat 456
|||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 175 gggggtggtgaagggagggccccaattggtagaaaaaaacccgcaaccccttgggggtat 116
Query: 457 cctgcacttggaagaagaagtagaaaaaggaataaatatagtgataatttgattcttcgt 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 cctgcacttggaagaagaagtagaaaaaggaataaatatagtgataatttgattcttcgt 56
Query: 517 cgccgtactaag 528
||||||||||||
Sbjct: 55 cgccgtactaag 44
>KJC_s16623
Length = 537
Score = 404 bits (204), Expect = e-113
Identities = 211/212 (99%), Gaps = 1/212 (0%)
Strand = Plus / Minus
Query: 218 cattaaaattaccttctggggaggttcgtttaatatccaaaaactgctcagcaacagtcg 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 cattaaaattaccttctggggaggttcgtttaatatccaaaaactgctcagcaacagtcg 161
Query: 278 gacaagtaggcaatactggggtgaaccagaaaagtttgggtagagccggatctaaatgtt 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 gacaagtaggcaatactggggtgaaccagaaaagtttgggtagagccggatctaaatgtt 101
Query: 338 ggctaggtaagcgtcctgtagtaagaggagtagttatgaaccctgtagaccat-ccccat 396
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 100 ggctaggtaagcgtcctgtagtaagaggagtagttatgaaccctgtagaccatcccccat 41
Query: 397 gggggtggtgaagggagggccccaattggtag 428
||||||||||||||||||||||||||||||||
Sbjct: 40 gggggtggtgaagggagggccccaattggtag 9
>KJC_s14410
Length = 495
Score = 274 bits (138), Expect = 2e-73
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 1 atatcatcatctacacccagaaagccgtatgctttggaagaagcttgtacagtttgggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 atatcatcatctacacccagaaagccgtatgctttggaagaagcttgtacagtttgggaa 417
Query: 61 gaggttttgattgatcaaaaagaagaatctacttcaaccgatatgcccttaggcacggcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gaggttttgattgatcaaaaagaagaatctacttcaaccgatatgcccttaggcacggcc 477
Query: 121 atacataacatagaaatc 138
||||||||||||||||||
Sbjct: 478 atacataacatagaaatc 495
>KJC_s17139
Length = 195
Score = 145 bits (73), Expect = 1e-34
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 456 tcctgcacttggaagaagaagtagaaaaaggaataaatatagtgataatttgattcttcg 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 tcctgcacttggaagaagaagtagaaaaaggaataaatatagtgataatttgattcttcg 56
Query: 516 tcgccgtactaag 528
|||||||||||||
Sbjct: 55 tcgccgtactaag 43
>KJC_s14742
Length = 207
Score = 87.7 bits (44), Expect = 2e-17
Identities = 44/44 (100%)
Strand = Plus / Minus
Query: 485 ggaataaatatagtgataatttgattcttcgtcgccgtactaag 528
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 ggaataaatatagtgataatttgattcttcgtcgccgtactaag 44