Jatropha Genome Database
- JcCA0000041.50
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0000041.50 + phase: 0
(555 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c00076 999 0.0
KJC_s17259 634 0.0
KJC_c01273 579 e-165
KJC_s14574 283 2e-76
>KJC_c00076
Length = 2335
Score = 999 bits (504), Expect = 0.0
Identities = 538/555 (96%)
Strand = Plus / Plus
Query: 1 atgagttggcgatcagaacgtatatggatagaacttatagcggggtctcgaaaaacaagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1282 atgagttggcgatcagaacgtatatggatagaacttatagcggggtctcgaaaaacaagt 1341
Query: 61 aatttctgctgggcccttatactttttttaggttcattgggnnnnnnnnnggttggaatt 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1342 aatttctgctgggcccttatactttttttaggttcattgggtttttttttggttggaatt 1401
Query: 121 tccagttatcttggcaaaaatttgatatctttatttccatctcagcaaataannnnnnnn 180
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1402 tccagttatcttggcaaaaatttgatatctttatttccatctcagcaaataatttttttt 1461
Query: 181 ccacaagggatcgtgatgtctttctatgggatcgccggtctatttattagttcttatttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1462 ccacaagggatcgtgatgtctttctatgggatcgccggtctatttattagttcttatttg 1521
Query: 241 tggtgcacaattttgtggaatgtaggtagtggttatgatcgattcgatagaaaagaagga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1522 tggtgcacaattttgtggaatgtaggtagtggttatgatcgattcgatagaaaagaagga 1581
Query: 301 atagtgtgtatttttcgctggggatttcctggaaaaaatcgtcgcatcttactccgattc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1582 atagtgtgtatttttcgctggggatttcctggaaaaaatcgtcgcatcttactccgattc 1641
Query: 361 cttatgaaagatattcagtctattaggctagaagttaaagagggtatttacgctcggcgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1642 cttatgaaagatattcagtctattaggctagaagttaaagagggtatttacgctcggcgt 1701
Query: 421 gccctttatatggaaatccgaggccggggggccattcctttgactcgtactgatgagaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1702 gccctttatatggaaatccgaggccggggggccattcctttgactcgtactgatgagaat 1761
Query: 481 ttgactccgcgagaaattgagcaaaaagtagccgaattggcctattttttgcgtgtacca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1762 ttgactccgcgagaaattgagcaaaaagtagccgaattggcctattttttgcgtgtacca 1821
Query: 541 attgaagtattttga 555
|||||||||||||||
Sbjct: 1822 attgaagtattttga 1836
>KJC_s17259
Length = 414
Score = 634 bits (320), Expect = 0.0
Identities = 371/384 (96%), Gaps = 5/384 (1%)
Strand = Plus / Plus
Query: 111 ggttggaatttccagttatcttggcaaaaatttgatatctttatttccatctcagcaaat 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33 ggttggaatttccagttatcttggcaaaaatttgatatctttatttccatctcagcaaat 92
Query: 171 aannnnnnnn-ccacaagggatcgtgatgtctttctatgggatcgccggtctatttatta 229
|| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 aatttttttttccacaagggatcgtgatgtctttctatgggatcgccggtctatttatta 152
Query: 230 gttcttatttgtggtgcacaattttgtggaatgtaggtagtggttatgatcgattcgata 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 gttcttatttgtggtgcacaattttgtggaatgtaggtagtggttatgatcgattcgata 212
Query: 290 gaaaagaaggaatagtgtgta-tttttcgctgggga-tttcctggaaaaaatcgtcgcat 347
|||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 213 gaaaagaagg-atagtgtgtattttttcgctggggattttcctggaaaaaatcgtcgcat 271
Query: 348 cttactccgattccttatgaaagatattcagtctattaggctagaagttaaagagggtat 407
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 272 cttactccgattccttatgaaagatattcagtctattaggctag-agttaaagagggtat 330
Query: 408 ttacgctcggcgtgccctttatatggaaatccgaggccggggggccattcctttgactcg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ttacgctcggcgtgccctttatatggaaatccgaggccggggggccattcctttgactcg 390
Query: 468 tactgatgagaatttgactccgcg 491
||||||||||||||||||||||||
Sbjct: 391 tactgatgagaatttgactccgcg 414
>KJC_c01273
Length = 1102
Score = 579 bits (292), Expect = e-165
Identities = 357/369 (96%), Gaps = 11/369 (2%)
Strand = Plus / Plus
Query: 195 gatgtctttctatgggatcgccggtc--tatttatta--gttctta--tttgtggtgc-a 247
||||||||||||||||||||||||| ||||||||| ||||||| |||||||||| |
Sbjct: 1 gatgtctttctatgggatcgccggtacgtatttattaacgttcttaagtttgtggtgcga 60
Query: 248 caa-ttttgtggaatgtaggtagtggttatgatcgattcgatagaaaagaaggaatagtg 306
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caagttttgtggaatgtaggtagtggttatgatcgattcgatagaaaagaaggaatagtg 120
Query: 307 tgtatttttcgctggggatttcctggaaaaaatcgtcgcatcttactccgattccttatg 366
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 121 tgtatttttcgctggggatttcctggaaaa-atcgtcgcatcttactccgattccttatg 179
Query: 367 aaagatattcagtctattaggctagaagttaaagagggtatttacgctcggcgtgccctt 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 aaagatattcagtctattaggctagaagttaaagagggtatttacgctcggcgtgccctt 239
Query: 427 tatatggaaatccgaggccggggggccattcctttgactcgtactgatgagaatttgact 486
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tatatggaaatccgaggcc-gggggccattcctttgactcgtactgatgagaatttgact 298
Query: 487 ccgcgagaaattgagcaaaaagtagccgaattggcctattttttgcgtgtaccaattgaa 546
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 299 ccgcgagaaattgagcaaaaagtagccgaattggccta-tttttgcgtgtaccaattgaa 357
Query: 547 gtattttga 555
|||||||||
Sbjct: 358 gtattttga 366
>KJC_s14574
Length = 548
Score = 283 bits (143), Expect = 2e-76
Identities = 143/143 (100%)
Strand = Plus / Plus
Query: 321 gggatttcctggaaaaaatcgtcgcatcttactccgattccttatgaaagatattcagtc 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggatttcctggaaaaaatcgtcgcatcttactccgattccttatgaaagatattcagtc 60
Query: 381 tattaggctagaagttaaagagggtatttacgctcggcgtgccctttatatggaaatccg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tattaggctagaagttaaagagggtatttacgctcggcgtgccctttatatggaaatccg 120
Query: 441 aggccggggggccattcctttga 463
|||||||||||||||||||||||
Sbjct: 121 aggccggggggccattcctttga 143