Jatropha Genome Database

JcCA0000041.40
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0000041.40 + phase: 0 /short
         (114 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00076                                                            170   4e-43
KJC_c06160                                                            101   3e-22

>KJC_c00076 
          Length = 2335

 Score =  170 bits (86), Expect = 4e-43
 Identities = 92/94 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgacaattcttaacaacctaccctccatttttgtgcctttagtgggcttagtatttccg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 atgacaattcttaacaacctaccctccatttttgtgcctttagtgggcttagtatttccg 783

                                             
Query: 61  gcaattgcaatggcttctttatctcttcatgttc 94
           |||||||||||||||||||||| |||| ||||||
Sbjct: 784 gcaattgcaatggcttctttatttctttatgttc 817


>KJC_c06160 
          Length = 612

 Score =  101 bits (51), Expect = 3e-22
 Identities = 64/67 (95%), Gaps = 1/67 (1%)
 Strand = Plus / Minus

                                                                       
Query: 28  atttttgtgcctttagtgggcttagtatttccggcaattgcaatggcttctttatctctt 87
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 602 atttttgtgcctttagtgggcttagtatttccggcaattgcaatggc-tctttatttctt 544

                  
Query: 88  catgttc 94
            ||||||
Sbjct: 543 tatgttc 537