Jatropha Genome Database

JcCA0000041.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0000041.20 - phase: 2 /pseudo/partial
         (250 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00002                                                            400   e-112
KJC_c00445                                                            129   3e-30
KJC_c01589                                                             52   6e-07

>KJC_c00002 
          Length = 4124

 Score =  400 bits (202), Expect = e-112
 Identities = 234/250 (93%)
 Strand = Plus / Plus

                                                                        
Query: 1    atattggaccaaattcatatcgagaaaggtagtatttcttttttcctaaaaatgtgnnnn 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 2025 atattggaccaaattcatatcgagaaaggtagtatttcttttttcctaaaaatgtgaaaa 2084

                                                                        
Query: 61   nnnnncannnnnnngtaaaatctcgtctattaataaatttctattccaacacggaacgaa 120
                 ||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2085 aaaaacatttttttgtaaaatctcgtctattaataaatttctattccaacacggaacgaa 2144

                                                                        
Query: 121  aagggcaatatacaggatgggtagaagaagttgtgatattgggctcgacccacgacccga 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2145 aagggcaatatacaggatgggtagaagaagttgtgatattgggctcgacccacgacccga 2204

                                                                        
Query: 181  aattagggaatataaaagaatacaccaatcctatagatccttaggattaattgtggatcc 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2205 aattagggaatataaaagaatacaccaatcctatagatccttaggattaattgtggatcc 2264

                      
Query: 241  aagataacaa 250
            ||||||||||
Sbjct: 2265 aagataacaa 2274


>KJC_c00445 
          Length = 1009

 Score =  129 bits (65), Expect = 3e-30
 Identities = 65/65 (100%)
 Strand = Plus / Plus

                                                                       
Query: 186 gggaatataaaagaatacaccaatcctatagatccttaggattaattgtggatccaagat 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2   gggaatataaaagaatacaccaatcctatagatccttaggattaattgtggatccaagat 61

                
Query: 246 aacaa 250
           |||||
Sbjct: 62  aacaa 66


>KJC_c01589 
          Length = 1286

 Score = 52.0 bits (26), Expect = 6e-07
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                             
Query: 75  gtaaaatctcgtctattaataaatttctattccaacacggaacgaaaagg 124
           ||||||||||   ||||||||| ||| |||||||||||| ||||||||||
Sbjct: 50  gtaaaatctctattattaataagtttatattccaacacgaaacgaaaagg 1