Jatropha Genome Database
- JcCA0000041.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0000041.10 + phase: 0 /partial
(501 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c00445 993 0.0
KJC_c00002 993 0.0
KJC_c08359 450 e-126
KJC_s14707 392 e-109
KJC_s20210 341 1e-93
KJC_c12588 305 5e-83
KJC_s15456 232 6e-61
KJC_s17677 159 8e-39
KJC_s16961 143 5e-34
KJC_s13167 119 7e-27
KJC_s13197 115 1e-25
KJC_s14554 101 2e-21
KJC_s15369 90 6e-18
>KJC_c00445
Length = 1009
Score = 993 bits (501), Expect = 0.0
Identities = 501/501 (100%)
Strand = Plus / Minus
Query: 1 atgcattttcgtgtactagctaaggcgttacgtttgtctggtggagatcatattcacgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atgcattttcgtgtactagctaaggcgttacgtttgtctggtggagatcatattcacgct 742
Query: 61 ggtaccgtagtaggtaaacttgaaggggaaagagacatcactttgggctttgttgattta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggtaccgtagtaggtaaacttgaaggggaaagagacatcactttgggctttgttgattta 682
Query: 121 ctgcgtgatgattttattgaaaaagatcgaagccgcggtatttatttcactcaagattgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgcgtgatgattttattgaaaaagatcgaagccgcggtatttatttcactcaagattgg 622
Query: 181 gtctctctaccgggtgttttgcctgtagcttcaggaggtattcacgtttggcatatgcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtctctctaccgggtgttttgcctgtagcttcaggaggtattcacgtttggcatatgcct 562
Query: 241 gctctgaccgagatctttggagatgattccgtactacaattcggtggaggaactttaggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctctgaccgagatctttggagatgattccgtactacaattcggtggaggaactttaggg 502
Query: 301 cacccttggggaaatgcacctggtgccgtagctaatcgagtagctctagaagcatgtgta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacccttggggaaatgcacctggtgccgtagctaatcgagtagctctagaagcatgtgta 442
Query: 361 caagctcgtaatgaaggacgtgatcttgctcgtgagggtaatgaaattatccgtgaggct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caagctcgtaatgaaggacgtgatcttgctcgtgagggtaatgaaattatccgtgaggct 382
Query: 421 agcaaatggagtcctgaactagctgctgcttgtgaagtatggaaggagattaaatttgaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcaaatggagtcctgaactagctgctgcttgtgaagtatggaaggagattaaatttgaa 322
Query: 481 ttccaagcgatggatactttg 501
|||||||||||||||||||||
Sbjct: 321 ttccaagcgatggatactttg 301
>KJC_c00002
Length = 4124
Score = 993 bits (501), Expect = 0.0
Identities = 501/501 (100%)
Strand = Plus / Minus
Query: 1 atgcattttcgtgtactagctaaggcgttacgtttgtctggtggagatcatattcacgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3011 atgcattttcgtgtactagctaaggcgttacgtttgtctggtggagatcatattcacgct 2952
Query: 61 ggtaccgtagtaggtaaacttgaaggggaaagagacatcactttgggctttgttgattta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2951 ggtaccgtagtaggtaaacttgaaggggaaagagacatcactttgggctttgttgattta 2892
Query: 121 ctgcgtgatgattttattgaaaaagatcgaagccgcggtatttatttcactcaagattgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2891 ctgcgtgatgattttattgaaaaagatcgaagccgcggtatttatttcactcaagattgg 2832
Query: 181 gtctctctaccgggtgttttgcctgtagcttcaggaggtattcacgtttggcatatgcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2831 gtctctctaccgggtgttttgcctgtagcttcaggaggtattcacgtttggcatatgcct 2772
Query: 241 gctctgaccgagatctttggagatgattccgtactacaattcggtggaggaactttaggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2771 gctctgaccgagatctttggagatgattccgtactacaattcggtggaggaactttaggg 2712
Query: 301 cacccttggggaaatgcacctggtgccgtagctaatcgagtagctctagaagcatgtgta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2711 cacccttggggaaatgcacctggtgccgtagctaatcgagtagctctagaagcatgtgta 2652
Query: 361 caagctcgtaatgaaggacgtgatcttgctcgtgagggtaatgaaattatccgtgaggct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2651 caagctcgtaatgaaggacgtgatcttgctcgtgagggtaatgaaattatccgtgaggct 2592
Query: 421 agcaaatggagtcctgaactagctgctgcttgtgaagtatggaaggagattaaatttgaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2591 agcaaatggagtcctgaactagctgctgcttgtgaagtatggaaggagattaaatttgaa 2532
Query: 481 ttccaagcgatggatactttg 501
|||||||||||||||||||||
Sbjct: 2531 ttccaagcgatggatactttg 2511
>KJC_c08359
Length = 515
Score = 450 bits (227), Expect = e-126
Identities = 315/343 (91%), Gaps = 11/343 (3%)
Strand = Plus / Plus
Query: 164 atttcactcaagattgggtctctctaccgggtgttttgcctgtagcttc-----aggagg 218
|||||||||||||||||||||||||||| ||| || ||||||||||||| ||||||
Sbjct: 6 atttcactcaagattgggtctctctaccaggtcttctgcctgtagcttcacttcaggagg 65
Query: 219 tattcacgtttggcatatgcctgctctgaccgagatctttggagatgattccgtactaca 278
| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 66 ttttcacctttggcatatgcctgctctgaccgagatctttggatatgattccgtactaca 125
Query: 279 attcggtggaggaactttagggcacccttggggaaatgcacctggtgccgtagctaatcg 338
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 126 attcggtggaggaactttagggcacccttggggaaatgcacccggtgccatagctaatcg 185
Query: 339 agtagctctagaagcatgtgtacaagctcgtaatgaaggacgtgatcttgctcgtgaggg 398
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 186 agtagctctagaagcatgtgtacaagctcgtaatgagggacgtgatcttgctcgtgaggg 245
Query: 399 taatgaaattatccgtgaggctagcaaatggagtcctgaactagctgctgcttgtgaagt 458
|||| |||| ||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 246 taattcaattctccgtgaggct-----atggagtcct-ttctagctgctgcttgtgaagt 299
Query: 459 atggaaggagattaaatttgaattccaagcgatggatactttg 501
||||||||||||| ||||||||||| |||| ||||||||||||
Sbjct: 300 atggaaggagattcaatttgaattcgaagcaatggatactttg 342
>KJC_s14707
Length = 346
Score = 392 bits (198), Expect = e-109
Identities = 221/225 (98%), Gaps = 3/225 (1%)
Strand = Plus / Minus
Query: 280 ttcggtgga-ggaactttaggg-caccc-ttggggaaatgcacctggtgccgtagctaat 336
||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 342 ttcggtggaaggaactttagggacacccgttggggaaatgcacctggtgccgtagctaat 283
Query: 337 cgagtagctctagaagcatgtgtacaagctcgtaatgaaggacgtgatcttgctcgtgag 396
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 282 cgagtagctctagaagcatgtgtacaagctcgtaangaaggacgtgatcttgctcgtgag 223
Query: 397 ggtaatgaaattatccgtgaggctagcaaatggagtcctgaactagctgctgcttgtgaa 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggtaatgaaattatccgtgaggctagcaaatggagtcctgaactagctgctgcttgtgaa 163
Query: 457 gtatggaaggagattaaatttgaattccaagcgatggatactttg 501
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 gtatggaaggagattaaatttgaattccaagcgatggatactttg 118
>KJC_s20210
Length = 308
Score = 341 bits (172), Expect = 1e-93
Identities = 172/172 (100%)
Strand = Plus / Minus
Query: 330 agctaatcgagtagctctagaagcatgtgtacaagctcgtaatgaaggacgtgatcttgc 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 agctaatcgagtagctctagaagcatgtgtacaagctcgtaatgaaggacgtgatcttgc 249
Query: 390 tcgtgagggtaatgaaattatccgtgaggctagcaaatggagtcctgaactagctgctgc 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tcgtgagggtaatgaaattatccgtgaggctagcaaatggagtcctgaactagctgctgc 189
Query: 450 ttgtgaagtatggaaggagattaaatttgaattccaagcgatggatactttg 501
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttgtgaagtatggaaggagattaaatttgaattccaagcgatggatactttg 137
>KJC_c12588
Length = 756
Score = 305 bits (154), Expect = 5e-83
Identities = 168/170 (98%), Gaps = 2/170 (1%)
Strand = Plus / Minus
Query: 30 acgtttgtctggtggagatcatattcacgctggtaccgtagtaggtaaacttgaagggga 89
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 acgtttgtctggtggagatcatattcacgctggtaccgtagtaggtaaacttgaagggga 697
Query: 90 aagagacatcactttgggctttgttgatttactgcgtgatgattttattgaaaaagatcg 149
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 696 aagag-catcactttgggctttgttgatttactgcgtgatgattt-attgaaaaagatcg 639
Query: 150 aagccgcggtatttatttcactcaagattgggtctctctaccgggtgttt 199
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 aagccgcggtatttatttcactcaagattgggtctctctaccgggtgttt 589
>KJC_s15456
Length = 416
Score = 232 bits (117), Expect = 6e-61
Identities = 138/141 (97%), Gaps = 3/141 (2%)
Strand = Plus / Plus
Query: 1 atgcattttcgtgtactagctaaggcgttacgtttgtctggtggagatcatattcacgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 atgcattttcgtgtactagctaaggcgttacgtttgtctggtggagatcatattcacgct 327
Query: 61 ggtaccgtagtaggtaaacttgaaggggaaagagacatcactttgggctttgttg-attt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 328 ggtaccgtagtaggtaaacttgaaggggaaagagacatcactttgggctttgttgtattt 387
Query: 120 actg-cgtgatg-attttatt 138
|||| ||||||| ||||||||
Sbjct: 388 actgtcgtgatgtattttatt 408
>KJC_s17677
Length = 237
Score = 159 bits (80), Expect = 8e-39
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 7 tttcgtgtactagctaaggcgttacgtttgtctggtggagatcatattcacgctggtacc 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 tttcgtgtactagctaaggcgttacgtttgtctggtggagatcatattcacgctggtacc 110
Query: 67 gtagtaggtaaacttgaagg 86
||||||||||||||||||||
Sbjct: 109 gtagtaggtaaacttgaagg 90
>KJC_s16961
Length = 403
Score = 143 bits (72), Expect = 5e-34
Identities = 81/84 (96%)
Strand = Plus / Plus
Query: 118 ttactgcgtgatgattttattgaaaaagatcgaagccgcggtatttatttcactcaagat 177
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 320 ttactgcgtgatgattttattagaaaagatcgaagccgcggtacttatttcactcaagat 379
Query: 178 tgggtctctctaccgggtgttttg 201
||||||||||||||||||||||||
Sbjct: 380 tgggtctctctaccgggtgttttg 403
>KJC_s13167
Length = 73
Score = 119 bits (60), Expect = 7e-27
Identities = 60/60 (100%)
Strand = Plus / Minus
Query: 309 gggaaatgcacctggtgccgtagctaatcgagtagctctagaagcatgtgtacaagctcg 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 gggaaatgcacctggtgccgtagctaatcgagtagctctagaagcatgtgtacaagctcg 1
>KJC_s13197
Length = 178
Score = 115 bits (58), Expect = 1e-25
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 444 tgctgcttgtgaagtatggaaggagattaaatttgaattccaagcgatggatactttg 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56 tgctgcttgtgaagtatggaaggagattaaatttgaattccaagcgatggatactttg 113
Score = 107 bits (54), Expect = 3e-23
Identities = 57/58 (98%)
Strand = Plus / Minus
Query: 421 agcaaatggagtcctgaactagctgctgcttgtgaagtatggaaggagattaaatttg 478
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 59 agcaaatggagtcctgaaccagctgctgcttgtgaagtatggaaggagattaaatttg 2
>KJC_s14554
Length = 512
Score = 101 bits (51), Expect = 2e-21
Identities = 60/62 (96%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 1 atgcattttcgtgtactagctaaggcgttacgtttgtctggtggagatcatattcacgct 60
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 453 atgcattttcgtgtactagctaaggcgttacgtttgtctggtg--gatcatattcacgct 510
Query: 61 gg 62
||
Sbjct: 511 gg 512
>KJC_s15369
Length = 223
Score = 89.7 bits (45), Expect = 6e-18
Identities = 80/90 (88%), Gaps = 10/90 (11%)
Strand = Plus / Minus
Query: 1 atgcattttcgtgtactagctaaggcgttacg-------tttgtctggtggagatcatat 53
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 89 atgcattttcgtgtactagctaaggc-ttacggggggggtttgtctggtggagatcatat 31
Query: 54 tcacgctggtacc--gtagtaggtaaactt 81
||||||||||||| |||||||||||||||
Sbjct: 30 tcacgctggtaccgggtagtaggtaaactt 1