Jatropha Genome Database

JcCD0179138.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCD0179138.10 + phase: 1 /pseudo/partial
         (585 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268521491|gb|FM894243.1|FM894243 FM894243 Jatropha curcas emb...   638   0.0  

>gi|268521491|gb|FM894243.1|FM894243 FM894243 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_004548,
           mRNA sequence
          Length = 546

 Score =  638 bits (322), Expect = 0.0
 Identities = 329/330 (99%), Gaps = 1/330 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcttcaattgtagctgataaaattgcattgaagctggtaggggccaggtgggtttgtgg 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 218 ttcttcaattgtagctgataaaattgcattgaagctggtaggg-ccaggtgggtttgtgg 276

                                                                       
Query: 61  tcacagaagctggctttggtgctgatattggaactgagaagttcatgaatattaagtgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tcacagaagctggctttggtgctgatattggaactgagaagttcatgaatattaagtgcc 336

                                                                       
Query: 121 gatatagtggtttaatgcctcagtgtgctattattgttgcaacaatcagagccctgaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gatatagtggtttaatgcctcagtgtgctattattgttgcaacaatcagagccctgaaga 396

                                                                       
Query: 181 tgcatggtggtgggccagaagttgttgctggaaggcctcttgaccatgcctacacaactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tgcatggtggtgggccagaagttgttgctggaaggcctcttgaccatgcctacacaactg 456

                                                                       
Query: 241 agaatgtgcctttggttgaagctggttgtgtgaatctggctaggcatatttcaaatacaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 agaatgtgcctttggttgaagctggttgtgtgaatctggctaggcatatttcaaatacaa 516

                                         
Query: 301 agtcttatggggtaaatgttgttgttgctg 330
           ||||||||||||||||||||||||||||||
Sbjct: 517 agtcttatggggtaaatgttgttgttgctg 546