Jatropha Genome Database

JcCD0139939.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCD0139939.10 - phase: 0 /partial
         (168 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268518845|gb|FM889088.1|FM889088 FM889088 Jatropha curcas emb...    90   9e-19
gi|268523896|gb|FM890582.1|FM890582 FM890582 Jatropha curcas emb...    48   3e-06

>gi|268518845|gb|FM889088.1|FM889088 FM889088 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002655,
           mRNA sequence
          Length = 149

 Score = 89.7 bits (45), Expect = 9e-19
 Identities = 82/91 (90%), Gaps = 5/91 (5%)
 Strand = Plus / Minus

                                                                       
Query: 77  gagaatattaccaattcgacaggactccttt--cttcaaggcaatgtggagagagggcaa 134
           |||||||||||||||||||||||||||||||   | ||||||||||||||||||||   |
Sbjct: 149 gagaatattaccaattcgacaggactcctttggttgcaaggcaatgtggagagagg--ca 92

                                          
Query: 135 aaagagtgcatttacgttgaaccagatgatg 165
           |||||| ||||||||| ||||||||||||||
Sbjct: 91  aaagagggcatttacg-tgaaccagatgatg 62


>gi|268523896|gb|FM890582.1|FM890582 FM890582 Jatropha curcas
          embryo 56-70 (DAF) Jatropha curcas cDNA clone
          rjcaeb0_000471, mRNA sequence
          Length = 353

 Score = 48.1 bits (24), Expect = 3e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 23 caatgccacattatcatgcaatggaggc 50
          ||||||| ||||||||||||||||||||
Sbjct: 5  caatgcctcattatcatgcaatggaggc 32