Jatropha Genome Database
- JcCD0119024.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCD0119024.10 - phase: 0 /pseudo/partial
(338 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|237680954|gb|GO247590.1|GO247590 JcrME_RL1134 Expressed seque... 569 e-163
gi|268521727|gb|FM894323.1|FM894323 FM894323 Jatropha curcas emb... 446 e-126
gi|268522504|gb|FM894649.1|FM894649 FM894649 Jatropha curcas emb... 432 e-121
gi|268525661|gb|FM890916.1|FM890916 FM890916 Jatropha curcas emb... 396 e-111
gi|268519044|gb|FM887511.1|FM887511 FM887511 Jatropha curcas emb... 311 3e-85
gi|268524815|gb|FM895513.1|FM895513 FM895513 Jatropha curcas emb... 170 6e-43
>gi|237680954|gb|GO247590.1|GO247590 JcrME_RL1134 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 831
Score = 569 bits (287), Expect = e-163
Identities = 331/338 (97%), Gaps = 7/338 (2%)
Strand = Plus / Plus
Query: 1 ttattagacagtatgggctatcaaaaggaaccaatgaggctatgtttgtaattgaagcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttattagacagtatgggctatcaaaaggaaccaatgaggctatgtttgtaattgaagcat 502
Query: 61 ataggaccttacgtgaccgtgggccatacccggcccatcaagtcctcaaggattttggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 503 ataggaccttacgtgaccgtgggccatacccggcccatcaagtcctcaaggattt-ggag 561
Query: 121 ggcacttttcggattttgtggtttatgacactaaagctggacatgtcttttgctgctctg 180
|||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 562 ggcacttt-cggattt-gtggtttatgacactaaagctggacatgtcttt-gctgctctg 618
Query: 181 ggtgcagaagaaggggtggaaatgtactggggaattgcaggtgatggttctgttgtaata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ggtgcagaagaaggggtggaaatgtactggggaattgcaggtgatggttctgttgtaata 678
Query: 241 tctgacaacttggagggcataaaaggaagctgtgcaaagtcatttgcaccatttccaaaa 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tctgacaacttggagggcataaaaggaagctgtgcaaagtcatttgcaccatttccaaa- 737
Query: 301 gggtgcatgttccatagtgaacaagggttgatgagttt 338
||||||||||||||||||||||| |||||||||||||
Sbjct: 738 -ggtgcatgttccatagtgaacaa-ggttgatgagttt 773
>gi|268521727|gb|FM894323.1|FM894323 FM894323 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_004646,
mRNA sequence
Length = 593
Score = 446 bits (225), Expect = e-126
Identities = 253/257 (98%), Gaps = 4/257 (1%)
Strand = Plus / Plus
Query: 1 ttattagacagtatgggctatcaaaaggaaccaatgaggctatgtttgtaattgaagcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ttattagacagtatgggctatcaaaaggaaccaatgaggctatgtttgtaattgaagcat 400
Query: 61 ataggaccttacgtgaccgtgggccatacccggcccatcaagtcctcaaggattttggag 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 401 ataggaccttacgtgaccgtgggccatacccggcccatcaagtcctcaagga-tttggag 459
Query: 121 ggcacttttcggattttgtggtttatgacactaaagctggacatgtcttttgctgctctg 180
||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 460 ggcac-tttcgga-tttgtggtttatgacactaaagctggacatgtc-tttgctgctctg 516
Query: 181 ggtgcagaagaaggggtggaaatgtactggggaattgcaggtgatggttctgttgtaata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ggtgcagaagaaggggtggaaatgtactggggaattgcaggtgatggttctgttgtaata 576
Query: 241 tctgacaacttggaggg 257
|||||||||||||||||
Sbjct: 577 tctgacaacttggaggg 593
>gi|268522504|gb|FM894649.1|FM894649 FM894649 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_000459,
mRNA sequence
Length = 587
Score = 432 bits (218), Expect = e-121
Identities = 249/254 (98%), Gaps = 4/254 (1%)
Strand = Plus / Plus
Query: 1 ttattagacagtatgggctatcaaaaggaaccaatgaggctatgtttgtaattgaagcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ttattagacagtatgggctatcaaaaggaaccaatgaggctatgtttgtaattgaagcat 397
Query: 61 ataggaccttacgtgaccgtgggccatacccggcccatcaagtcctcaaggattttggag 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 398 ataggaccttacgtgaccgtgggccatacccggcccatcaagtcctcaagga-tttggag 456
Query: 121 ggcacttttcggattttgtggtttatgacactaaagctggacatgtcttttgctgctctg 180
||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 457 ggcac-tttcgga-tttgtggtttatgacactaaagctggacatgtc-tttgctgctctg 513
Query: 181 ggtgcagaagaaggggtggaaatgtactggggaattgcaggtgatggttctgttgtaata 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ggtgcagaagaacgggtggaaatgtactggggaattgcaggtgatggttctgttgtaata 573
Query: 241 tctgacaacttgga 254
||||||||||||||
Sbjct: 574 tctgacaacttgga 587
>gi|268525661|gb|FM890916.1|FM890916 FM890916 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_000878,
mRNA sequence
Length = 590
Score = 396 bits (200), Expect = e-111
Identities = 237/244 (97%), Gaps = 4/244 (1%)
Strand = Plus / Plus
Query: 1 ttattagacagtatgggctatcaaaaggaaccaatgaggctatgtttgtaattgaagcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ttattagacagtatgggctatcaaaaggaaccaatgaggctatgtttgtaattgaagcat 410
Query: 61 ataggaccttacgtgaccgtgggccatacccggcccatcaagtcctcaaggattttggag 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 411 ataggaccttacgtgaccgtgggccatacccggcccatcaagtcctcaagga-tttggag 469
Query: 121 ggcacttttcggattttgtggtttatgacactaaagctggacatgtcttttgctgctctg 180
||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 470 ggcac-tttcgga-tttgtggtttatgacactaaagctggacatgtc-tttgctgctctg 526
Query: 181 ggtgcagaagaaggggtggaaatgtactggggaattgcaggtgatggttctgttgtaata 240
|||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 527 ggtgcagaagaacgggtggacatgtactggggaattgcacgtgatggttctgttgtaata 586
Query: 241 tctg 244
||||
Sbjct: 587 tctg 590
>gi|268519044|gb|FM887511.1|FM887511 FM887511 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_000730,
mRNA sequence
Length = 494
Score = 311 bits (157), Expect = 3e-85
Identities = 157/157 (100%)
Strand = Plus / Plus
Query: 182 gtgcagaagaaggggtggaaatgtactggggaattgcaggtgatggttctgttgtaatat 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgcagaagaaggggtggaaatgtactggggaattgcaggtgatggttctgttgtaatat 60
Query: 242 ctgacaacttggagggcataaaaggaagctgtgcaaagtcatttgcaccatttccaaaag 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctgacaacttggagggcataaaaggaagctgtgcaaagtcatttgcaccatttccaaaag 120
Query: 302 ggtgcatgttccatagtgaacaagggttgatgagttt 338
|||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggtgcatgttccatagtgaacaagggttgatgagttt 157
>gi|268524815|gb|FM895513.1|FM895513 FM895513 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002447,
mRNA sequence
Length = 471
Score = 170 bits (86), Expect = 6e-43
Identities = 112/118 (94%), Gaps = 2/118 (1%)
Strand = Plus / Minus
Query: 223 gatggttctgttgtaatatctgacaa-cttgga-gggcataaaaggaagctgtgcaaagt 280
|||||||||||||||||||||||| | |||||| |||||| || ||||||||||||||||
Sbjct: 471 gatggttctgttgtaatatctgactatcttggatgggcattaatggaagctgtgcaaagt 412
Query: 281 catttgcaccatttccaaaagggtgcatgttccatagtgaacaagggttgatgagttt 338
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 411 catttgcaccatttccaaaagggtgcatgttccatagtgtacaagggttgatgagttt 354