Jatropha Genome Database

JcCD0100451.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCD0100451.10 + phase: 0 /pseudo/partial
         (442 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268522251|gb|FM893884.1|FM893884 FM893884 Jatropha curcas emb...   208   4e-54

>gi|268522251|gb|FM893884.1|FM893884 FM893884 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_004821,
           mRNA sequence
          Length = 275

 Score =  208 bits (105), Expect = 4e-54
 Identities = 138/149 (92%)
 Strand = Plus / Plus

                                                                       
Query: 138 aaattgccccaaatctatcaacgccttggtcttgagtatgatgagaaggtgctaccctca 197
           |||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||| 
Sbjct: 120 aaattgccccaaatctttcaacgccttggtctcgagtatgatgagaaggtgctcccctct 179

                                                                       
Query: 198 attggcaatgaggttttgaaggctgtggttgcacagttcaatgctgaccagctcctcaca 257
           ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| || 
Sbjct: 180 attggcaatgaggttttgaaggctgtggttgcacagttcaacgctgatcagctccttact 239

                                        
Query: 258 gaacgtccgcatgtatcagctctggtccg 286
           |||||||||||||| || ||||| |||||
Sbjct: 240 gaacgtccgcatgtctcggctctagtccg 268