Jatropha Genome Database
- JcCD0062083.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCD0062083.10 + phase: 0
(222 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|262091291|gb|GT228718.1|GT228718 JC283 Jatropha seeds from fr... 317 3e-87
gi|268523966|gb|FM890652.1|FM890652 FM890652 Jatropha curcas emb... 309 7e-85
gi|268517554|gb|FM889265.1|FM889265 FM889265 Jatropha curcas emb... 236 8e-63
>gi|262091291|gb|GT228718.1|GT228718 JC283 Jatropha seeds from
fruits at three stages of maturation Jatropha curcas
cDNA clone PL05SE.G01.scf 5', mRNA sequence
Length = 604
Score = 317 bits (160), Expect = 3e-87
Identities = 167/168 (99%), Gaps = 1/168 (0%)
Strand = Plus / Minus
Query: 1 atggacacggagctgagggcgcccatgggggacttcagggggaaagtgtggagcatgagt 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 458 atggacacggagctgagggcgcccatgggg-acttcagggggaaagtgtggagcatgagt 400
Query: 61 ggaggtccatactgcaggcccaagcattggcgccgtaacactgccatcgctatggctagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ggaggtccatactgcaggcccaagcattggcgccgtaacactgccatcgctatggctagc 340
Query: 121 gttttcctgatctgcatccctatcgccatgaaatctgcagagctcgag 168
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gttttcctgatctgcatccctatcgccatgaaatctgcagagctcgag 292
>gi|268523966|gb|FM890652.1|FM890652 FM890652 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_000559,
mRNA sequence
Length = 452
Score = 309 bits (156), Expect = 7e-85
Identities = 166/168 (98%), Gaps = 1/168 (0%)
Strand = Plus / Plus
Query: 1 atggacacggagctgagggcgcccatgggggacttcagggggaaagtgtggagcatgagt 60
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 83 atggacacggagctgatggcgcccatgggg-acttcagggggaaagtgtggagcatgagt 141
Query: 61 ggaggtccatactgcaggcccaagcattggcgccgtaacactgccatcgctatggctagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 ggaggtccatactgcaggcccaagcattggcgccgtaacactgccatcgctatggctagc 201
Query: 121 gttttcctgatctgcatccctatcgccatgaaatctgcagagctcgag 168
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gttttcctgatctgcatccctatcgccatgaaatctgcagagctcgag 249
>gi|268517554|gb|FM889265.1|FM889265 FM889265 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002880,
mRNA sequence
Length = 123
Score = 236 bits (119), Expect = 8e-63
Identities = 122/123 (99%)
Strand = Plus / Plus
Query: 40 gggaaagtgtggagcatgagtggaggtccatactgcaggcccaagcattggcgccgtaac 99
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggaaagtgtggagcatgagtggaggtccatactgcaggcccaagcattggcgccgtaac 60
Query: 100 actgccatcgctatggctagcgttttcctgatctgcatccctatcgccatgaaatctgca 159
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gctgccatcgctatggctagcgttttcctgatctgcatccctatcgccatgaaatctgca 120
Query: 160 gag 162
|||
Sbjct: 121 gag 123