Jatropha Genome Database
- JcCB1005111.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB1005111.20 + phase: 0
(207 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268519705|gb|FM888172.1|FM888172 FM888172 Jatropha curcas emb... 161 4e-40
gi|262091131|gb|GT228558.1|GT228558 JC123 Jatropha seeds from fr... 107 5e-24
gi|237680975|gb|GO247611.1|GO247611 JcrME_RL1155 Expressed seque... 86 2e-17
gi|262091312|gb|GT228739.1|GT228739 JC304 Jatropha seeds from fr... 74 7e-14
>gi|268519705|gb|FM888172.1|FM888172 FM888172 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001520,
mRNA sequence
Length = 383
Score = 161 bits (81), Expect = 4e-40
Identities = 168/197 (85%)
Strand = Plus / Plus
Query: 1 atgatgatgacatcaggtgaagctgtcaaatacaagagctcatacgatgcattctctcag 60
||||||||||| || |||||||||||||| |||||||| || ||||| |||||||||
Sbjct: 102 atgatgatgacctctggtgaagctgtcaagtacaagagttctcttgatgccttctctcag 161
Query: 61 atccttaagaatgagggagccaaatctctcttcaagggtgctggtgcaaatatcctccgc 120
||| | ||||||||||| ||||| ||||||||||||||||| || ||||| || |||||
Sbjct: 162 atcttgaagaatgagggtgccaagtctctcttcaagggtgcaggagcaaacattctccgt 221
Query: 121 gcgattgctggagctggtgttcttgctggatatgacaagcttcagatgattgttttcgga 180
|| |||||||| |||||||| |||||||| ||||||||| | ||| ||||||| |||||
Sbjct: 222 gctattgctggtgctggtgtgcttgctggttatgacaagttgcagctgattgtcttcggc 281
Query: 181 aagaagtacggttctgg 197
|||||||| || |||||
Sbjct: 282 aagaagtatggatctgg 298
>gi|262091131|gb|GT228558.1|GT228558 JC123 Jatropha seeds from
fruits at three stages of maturation Jatropha curcas
cDNA clone Contig125 5', mRNA sequence
Length = 542
Score = 107 bits (54), Expect = 5e-24
Identities = 165/202 (81%)
Strand = Plus / Plus
Query: 1 atgatgatgacatcaggtgaagctgtcaaatacaagagctcatacgatgcattctctcag 60
||||||||||| ||||| |||||||| || ||||||||||| | |||||||| ||||||
Sbjct: 53 atgatgatgacctcaggagaagctgtgaagtacaagagctctttggatgcattttctcag 112
Query: 61 atccttaagaatgagggagccaaatctctcttcaagggtgctggtgcaaatatcctccgc 120
||| | |||||||| || | ||||| ||||||||||| ||||||||||| ||||| ||
Sbjct: 113 atcatcaagaatgaagggactaaatccctcttcaagggagctggtgcaaacatccttcgt 172
Query: 121 gcgattgctggagctggtgttcttgctggatatgacaagcttcagatgattgttttcgga 180
|| | || || | |||||| ||||| || |||||||| |||||| | ||||| || ||
Sbjct: 173 gctgtagcaggtgttggtgtgcttgccggttatgacaaacttcagcttattgtctttggc 232
Query: 181 aagaagtacggttctggcggag 202
||||| || || ||||||||||
Sbjct: 233 aagaaatatggatctggcggag 254
>gi|237680975|gb|GO247611.1|GO247611 JcrME_RL1155 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 675
Score = 85.7 bits (43), Expect = 2e-17
Identities = 165/203 (81%), Gaps = 2/203 (0%)
Strand = Plus / Minus
Query: 1 atgatgatgacatcaggtg-aagctgtcaaatacaagagctcatacgatgcattctctca 59
||||||||||| ||||| | |||||| || ||||||||||| | |||||||| |||||
Sbjct: 489 atgatgatgacctcagggggaagctgggaagtacaagagctcttg-gatgcattttctca 431
Query: 60 gatccttaagaatgagggagccaaatctctcttcaagggtgctggtgcaaatatcctccg 119
|||| | |||||||| || | ||||| ||||||||||| ||||||||||| ||||| ||
Sbjct: 430 gatcatcaagaatgaagggactaaatccctcttcaagggagctggtgcaaacatccttcg 371
Query: 120 cgcgattgctggagctggtgttcttgctggatatgacaagcttcagatgattgttttcgg 179
|| | || || |||||||| ||||| || |||||||| |||||| | ||||| || ||
Sbjct: 370 tgctgtagcaggtgctggtgtgcttgccggttatgacaaacttcagcttattgtctttgg 311
Query: 180 aaagaagtacggttctggcggag 202
||||| || || ||||||||||
Sbjct: 310 caagaaatatggatctggcggag 288
>gi|262091312|gb|GT228739.1|GT228739 JC304 Jatropha seeds from
fruits at three stages of maturation Jatropha curcas
cDNA clone PL06SE.F09.scf 5', mRNA sequence
Length = 621
Score = 73.8 bits (37), Expect = 7e-14
Identities = 79/93 (84%)
Strand = Plus / Plus
Query: 1 atgatgatgacatcaggtgaagctgtcaaatacaagagctcatacgatgcattctctcag 60
||||||||||| || |||||||||||||| |||||||| || ||||| |||||||||
Sbjct: 517 atgatgatgacctctggtgaagctgtcaagtacaagagttctcttgatgccttctctcag 576
Query: 61 atccttaagaatgagggagccaaatctctcttc 93
||| | ||||||||||| ||| | |||||||||
Sbjct: 577 atcttgaagaatgagggtgcccagtctctcttc 609