Jatropha Genome Database

JcCB0868471.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0868471.10 - phase: 0 /partial
         (312 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|262090972|gb|GT229330.1|GT229330 JC895 Jatropha seeds from fr...   127   8e-30
gi|268518430|gb|FM888704.1|FM888704 FM888704 Jatropha curcas emb...   115   3e-26
gi|268520477|gb|FM890325.1|FM890325 FM890325 Jatropha curcas emb...   115   3e-26

>gi|262090972|gb|GT229330.1|GT229330 JC895 Jatropha seeds from
           fruits at three stages of maturation Jatropha curcas
           cDNA clone PL21SE.D09.scf 5', mRNA sequence
          Length = 194

 Score =  127 bits (64), Expect = 8e-30
 Identities = 64/64 (100%)
 Strand = Plus / Plus

                                                                       
Query: 88  ccgatgttagaaggtgctaaattaatcggtgcgggagcagctacaatcgctttggcggga 147
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 ccgatgttagaaggtgctaaattaatcggtgcgggagcagctacaatcgctttggcggga 190

               
Query: 148 gcag 151
           ||||
Sbjct: 191 gcag 194


>gi|268518430|gb|FM888704.1|FM888704 FM888704 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002162,
           mRNA sequence
          Length = 197

 Score =  115 bits (58), Expect = 3e-26
 Identities = 58/58 (100%)
 Strand = Plus / Plus

                                                                     
Query: 1   gaaagaaagatagaaccagatgcattcttaaaagaaagcgcttttcgatgcaaggaat 58
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86  gaaagaaagatagaaccagatgcattcttaaaagaaagcgcttttcgatgcaaggaat 143


>gi|268520477|gb|FM890325.1|FM890325 FM890325 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_004159,
           mRNA sequence
          Length = 297

 Score =  115 bits (58), Expect = 3e-26
 Identities = 58/58 (100%)
 Strand = Plus / Plus

                                                                     
Query: 1   gaaagaaagatagaaccagatgcattcttaaaagaaagcgcttttcgatgcaaggaat 58
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56  gaaagaaagatagaaccagatgcattcttaaaagaaagcgcttttcgatgcaaggaat 113