Jatropha Genome Database
- JcCB0843901.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0843901.10 - phase: 1 /partial
(527 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268522648|gb|FM896689.1|FM896689 FM896689 Jatropha curcas emb... 765 0.0
gi|268522970|gb|FM896413.1|FM896413 FM896413 Jatropha curcas emb... 688 0.0
gi|268521341|gb|FM892060.1|FM892060 FM892060 Jatropha curcas emb... 543 e-155
gi|268521463|gb|FM894215.1|FM894215 FM894215 Jatropha curcas emb... 515 e-146
gi|268524171|gb|FM894850.1|FM894850 FM894850 Jatropha curcas emb... 270 1e-72
gi|237680825|gb|GO247037.1|GO247037 JcrME_RL0581 Expressed seque... 145 6e-35
gi|268525178|gb|FM895820.1|FM895820 FM895820 Jatropha curcas emb... 127 1e-29
gi|237680864|gb|GO247076.1|GO247076 JcrME_RL0620 Expressed seque... 119 3e-27
gi|268524832|gb|FM895530.1|FM895530 FM895530 Jatropha curcas emb... 92 8e-19
gi|268523555|gb|FM892088.1|FM892088 FM892088 Jatropha curcas emb... 66 4e-11
gi|218686973|gb|GH295941.1|GH295941 JCL390 Jatropha curcas total... 60 3e-09
gi|218687037|gb|GH296421.1|GH296421 JCL871 Jatropha curcas total... 60 3e-09
gi|218687642|gb|GH296235.1|GH296235 JCL684 Jatropha curcas total... 60 3e-09
gi|218687819|gb|GH296334.1|GH296334 JCL784 Jatropha curcas total... 60 3e-09
gi|218687859|gb|GH295841.1|GH295841 JCL290 Jatropha curcas total... 60 3e-09
gi|268519832|gb|FM888299.1|FM888299 FM888299 Jatropha curcas emb... 52 6e-07
>gi|268522648|gb|FM896689.1|FM896689 FM896689 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003965,
mRNA sequence
Length = 565
Score = 765 bits (386), Expect = 0.0
Identities = 409/414 (98%), Gaps = 2/414 (0%)
Strand = Plus / Minus
Query: 26 ctttgggctgtttttagcaagaaaggtgtcactaattcgagccttggcttacatggtggc 85
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctttgggctgttttaagcaagaaaggtgtcactaattcgagccttggcttacatggtggc 506
Query: 86 t-cagtgtttaggtgccatctgtggtgtagggttggtcaaagcttttatgaagaatccat 144
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 505 ttcagtgtttaggtgccatctgtggtgtagtgttggtcaaagcttttatgaagaatccat 446
Query: 145 ataatcatcttggtggt-ggtgctaactctgtaaataccggctatagcaaaggaactgct 203
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ataatcatcttggttgttggtgctaactctgtaaataccggctatagcaaaggaactgct 386
Query: 204 ttgggtgctgagatcatcggcacttttgttctagtctacactgttttctctgcaactgac 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgggtgctgagatcatcggcacttttgttctagtctacactgttttctctgcaactgac 326
Query: 264 cccaagagaagtgcacgtgactcacacgttcctattttggctccacttccaattgggttt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cccaagagaagtgcacgtgactcacacgttcctattttggctccacttccaattgggttt 266
Query: 324 gcagtttttatggttcacttggctaccatacccattactggtactggtattaacccagcg 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcagtttttatggttcacttggctaccatacccattactggtactggtattaacccagcg 206
Query: 384 aggagcttcggtgctgctgttatttacaacaatgataaagtctgggatgatcat 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 aggagcttcggtgctgctgttatttacaacaatgataaagtctgggatgatcat 152
>gi|268522970|gb|FM896413.1|FM896413 FM896413 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003629,
mRNA sequence
Length = 473
Score = 688 bits (347), Expect = 0.0
Identities = 354/355 (99%), Gaps = 1/355 (0%)
Strand = Plus / Plus
Query: 83 ggctcagtgtttaggtgccatctgtggtgtagggttggtcaaagcttttatgaagaatcc 142
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 50 ggctcagtgtttaggtgc-atctgtggtgtagggttggtcaaagcttttatgaagaatcc 108
Query: 143 atataatcatcttggtggtggtgctaactctgtaaataccggctatagcaaaggaactgc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 atataatcatcttggtggtggtgctaactctgtaaataccggctatagcaaaggaactgc 168
Query: 203 tttgggtgctgagatcatcggcacttttgttctagtctacactgttttctctgcaactga 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 tttgggtgctgagatcatcggcacttttgttctagtctacactgttttctctgcaactga 228
Query: 263 ccccaagagaagtgcacgtgactcacacgttcctattttggctccacttccaattgggtt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 ccccaagagaagtgcacgtgactcacacgttcctattttggctccacttccaattgggtt 288
Query: 323 tgcagtttttatggttcacttggctaccatacccattactggtactggtattaacccagc 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tgcagtttttatggttcacttggctaccatacccattactggtactggtattaacccagc 348
Query: 383 gaggagcttcggtgctgctgttatttacaacaatgataaagtctgggatgatcat 437
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gaggagcttcggtgctgctgttatttacaacaatgataaagtctgggatgatcat 403
>gi|268521341|gb|FM892060.1|FM892060 FM892060 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_002524,
mRNA sequence
Length = 549
Score = 543 bits (274), Expect = e-155
Identities = 274/274 (100%)
Strand = Plus / Plus
Query: 164 tgctaactctgtaaataccggctatagcaaaggaactgctttgggtgctgagatcatcgg 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tgctaactctgtaaataccggctatagcaaaggaactgctttgggtgctgagatcatcgg 64
Query: 224 cacttttgttctagtctacactgttttctctgcaactgaccccaagagaagtgcacgtga 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cacttttgttctagtctacactgttttctctgcaactgaccccaagagaagtgcacgtga 124
Query: 284 ctcacacgttcctattttggctccacttccaattgggtttgcagtttttatggttcactt 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ctcacacgttcctattttggctccacttccaattgggtttgcagtttttatggttcactt 184
Query: 344 ggctaccatacccattactggtactggtattaacccagcgaggagcttcggtgctgctgt 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggctaccatacccattactggtactggtattaacccagcgaggagcttcggtgctgctgt 244
Query: 404 tatttacaacaatgataaagtctgggatgatcat 437
||||||||||||||||||||||||||||||||||
Sbjct: 245 tatttacaacaatgataaagtctgggatgatcat 278
>gi|268521463|gb|FM894215.1|FM894215 FM894215 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_004515,
mRNA sequence
Length = 625
Score = 515 bits (260), Expect = e-146
Identities = 263/264 (99%)
Strand = Plus / Plus
Query: 1 gtggtcatattaacccagcagtgacctttgggctgtttttagcaagaaaggtgtcactaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gtggtcatattaacccagcagtgacctttgggctgtttttagcaagaaaggtgtcactaa 421
Query: 61 ttcgagccttggcttacatggtggctcagtgtttaggtgccatctgtggtgtagggttgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ttcgagccttggcttacatggtggctcagtgtttaggtgccatctgtggtgtagggttgg 481
Query: 121 tcaaagcttttatgaagaatccatataatcatcttggtggtggtgctaactctgtaaata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tcaaagcttttatgaagaatccatataatcatcttggtggtggtgctaactctgtaaata 541
Query: 181 ccggctatagcaaaggaactgctttgggtgctgagatcatcggcacttttgttctagtct 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 542 ccggctatagcaaaggaactgctttgggtgctgagatcatcggcacttatgttctagtct 601
Query: 241 acactgttttctctgcaactgacc 264
||||||||||||||||||||||||
Sbjct: 602 acactgttttctctgcaactgacc 625
>gi|268524171|gb|FM894850.1|FM894850 FM894850 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_000739,
mRNA sequence
Length = 491
Score = 270 bits (136), Expect = 1e-72
Identities = 136/136 (100%)
Strand = Plus / Plus
Query: 1 gtggtcatattaacccagcagtgacctttgggctgtttttagcaagaaaggtgtcactaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gtggtcatattaacccagcagtgacctttgggctgtttttagcaagaaaggtgtcactaa 415
Query: 61 ttcgagccttggcttacatggtggctcagtgtttaggtgccatctgtggtgtagggttgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ttcgagccttggcttacatggtggctcagtgtttaggtgccatctgtggtgtagggttgg 475
Query: 121 tcaaagcttttatgaa 136
||||||||||||||||
Sbjct: 476 tcaaagcttttatgaa 491
>gi|237680825|gb|GO247037.1|GO247037 JcrME_RL0581 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 674
Score = 145 bits (73), Expect = 6e-35
Identities = 175/209 (83%)
Strand = Plus / Minus
Query: 204 ttgggtgctgagatcatcggcacttttgttctagtctacactgttttctctgcaactgac 263
||||| ||||| || || ||||| |||||||| ||||||||||| |||||||| |||||
Sbjct: 557 ttgggagctgaaattattggcacctttgttcttgtctacactgtcttctctgctactgat 498
Query: 264 cccaagagaagtgcacgtgactcacacgttcctattttggctccacttccaattgggttt 323
|| ||||||| ||| | ||||| || |||||| |||||||||||||||||||||| |||
Sbjct: 497 cctaagagaaatgccagagactctcatgttcctgttttggctccacttccaattggattt 438
Query: 324 gcagtttttatggttcacttggctaccatacccattactggtactggtattaacccagcg 383
|| || || |||||||||||||| || || || || || || ||||| |||||||||||
Sbjct: 437 gctgtgttcatggttcacttggccacaattccaataacaggaactgggattaacccagca 378
Query: 384 aggagcttcggtgctgctgttatttacaa 412
||||| || || |||||||| ||||||||
Sbjct: 377 aggagtttgggagctgctgtgatttacaa 349
>gi|268525178|gb|FM895820.1|FM895820 FM895820 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002815,
mRNA sequence
Length = 531
Score = 127 bits (64), Expect = 1e-29
Identities = 148/176 (84%)
Strand = Plus / Plus
Query: 207 ggtgctgagatcatcggcacttttgttctagtctacactgttttctctgcaactgacccc 266
||||||||||| | ||||| |||||||| ||||||||||| ||||| || ||||| |
Sbjct: 354 ggtgctgagattgttggcacctttgttcttgtctacactgtcttctccgccactgatgct 413
Query: 267 aagagaagtgcacgtgactcacacgttcctattttggctccacttccaattgggtttgca 326
||||| || || | ||||| || || |||||||||||||| ||||| ||||||||||||
Sbjct: 414 aagaggagcgccagggactctcatgtccctattttggctcctcttcccattgggtttgca 473
Query: 327 gtttttatggttcacttggctaccatacccattactggtactggtattaacccagc 382
|| || ||||||||||||| ||||| ||||||||||| ||||| |||||||||||
Sbjct: 474 gtgttcttggttcacttggccaccatccccattactggaactggcattaacccagc 529
>gi|237680864|gb|GO247076.1|GO247076 JcrME_RL0620 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 626
Score = 119 bits (60), Expect = 3e-27
Identities = 154/184 (83%), Gaps = 1/184 (0%)
Strand = Plus / Minus
Query: 229 ttgttctagtctacactgttttctctgcaactgaccccaagagaagtgcacgtgactcac 288
||||||| ||||||||||| |||||||| ||||| || ||||||| ||| | ||||| |
Sbjct: 539 ttgttcttgtctacactgtcttctctgctactgatcctaagagaaatgccagagactctc 480
Query: 289 acgttcctattttggctccacttccaattgggtttgcagtttttatggttcacttggcta 348
| |||||| ||| |||||||||||||||||| ||||| || || |||||||||||||| |
Sbjct: 479 atgttcctgttt-ggctccacttccaattggatttgctgtgttcatggttcacttggcca 421
Query: 349 ccatacccattactggtactggtattaacccagcgaggagcttcggtgctgctgttattt 408
| || || || || || ||||| ||||||||||| ||||| || || |||||||| ||||
Sbjct: 420 caattccaataacaggaactgggattaacccagcaaggagttttggggctgctgtgattt 361
Query: 409 acaa 412
||||
Sbjct: 360 acaa 357
>gi|268524832|gb|FM895530.1|FM895530 FM895530 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002468,
mRNA sequence
Length = 483
Score = 91.7 bits (46), Expect = 8e-19
Identities = 80/90 (88%), Gaps = 1/90 (1%)
Strand = Plus / Minus
Query: 299 tttggctccacttccaattgggtttgcagtttttatggttcacttggctaccatacccat 358
||||||||| ||||| ||||||||| |||| ||| ||||||||||||| ||||| |||||
Sbjct: 452 tttggctcctcttcccattgggttt-cagtgtttttggttcacttggccaccatccccat 394
Query: 359 tactggtactggtattaacccagcgaggag 388
|||||| ||||| ||||||||||| |||||
Sbjct: 393 tactggaactggcattaacccagccaggag 364
>gi|268523555|gb|FM892088.1|FM892088 FM892088 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_002565,
mRNA sequence
Length = 454
Score = 65.9 bits (33), Expect = 4e-11
Identities = 96/117 (82%)
Strand = Plus / Plus
Query: 207 ggtgctgagatcatcggcacttttgttctagtctacactgttttctctgcaactgacccc 266
||||||||||| | ||||| |||||||| ||||||||||| ||||| || ||||| |
Sbjct: 338 ggtgctgagattgttggcacctttgttcttgtctacactgtcttctccgccactgatgct 397
Query: 267 aagagaagtgcacgtgactcacacgttcctattttggctccacttccaattgggttt 323
||||| || || | ||||| || || |||||||||||||| ||||| |||||||||
Sbjct: 398 aagaggagcgccagggactctcatgtccctattttggctcctcttcccattgggttt 454
>gi|218686973|gb|GH295941.1|GH295941 JCL390 Jatropha curcas total
leaf library Jatropha curcas cDNA, mRNA sequence
Length = 782
Score = 60.0 bits (30), Expect = 3e-09
Identities = 117/146 (80%)
Strand = Plus / Plus
Query: 237 gtctacactgttttctctgcaactgaccccaagagaagtgcacgtgactcacacgttcct 296
||||||||||| |||||||| ||||| |||| | | ||| | ||||| || ||||||
Sbjct: 411 gtctacactgtcttctctgctactgatgccaaacgtaatgccagagactcccatgttcct 470
Query: 297 attttggctccacttccaattgggtttgcagtttttatggttcacttggctaccataccc 356
|||||||| ||| | ||||||||||| || || || |||| ||||||||||| || ||
Sbjct: 471 attttggcaccattgccaattgggttcgccgtgttcttggtgcacttggctacaatccca 530
Query: 357 attactggtactggtattaacccagc 382
|| || || |||||||| ||||||||
Sbjct: 531 atcacaggaactggtatcaacccagc 556
>gi|218687037|gb|GH296421.1|GH296421 JCL871 Jatropha curcas total
leaf library Jatropha curcas cDNA, mRNA sequence
Length = 826
Score = 60.0 bits (30), Expect = 3e-09
Identities = 117/146 (80%)
Strand = Plus / Plus
Query: 237 gtctacactgttttctctgcaactgaccccaagagaagtgcacgtgactcacacgttcct 296
||||||||||| |||||||| ||||| |||| | | ||| | ||||| || ||||||
Sbjct: 342 gtctacactgtcttctctgctactgatgccaaacgtaatgccagagactcccatgttcct 401
Query: 297 attttggctccacttccaattgggtttgcagtttttatggttcacttggctaccataccc 356
|||||||| ||| | ||||||||||| || || || |||| ||||||||||| || ||
Sbjct: 402 attttggcaccattgccaattgggttcgccgtgttcttggtgcacttggctacaatccca 461
Query: 357 attactggtactggtattaacccagc 382
|| || || |||||||| ||||||||
Sbjct: 462 atcacaggaactggtatcaacccagc 487
>gi|218687642|gb|GH296235.1|GH296235 JCL684 Jatropha curcas total
leaf library Jatropha curcas cDNA, mRNA sequence
Length = 826
Score = 60.0 bits (30), Expect = 3e-09
Identities = 117/146 (80%)
Strand = Plus / Plus
Query: 237 gtctacactgttttctctgcaactgaccccaagagaagtgcacgtgactcacacgttcct 296
||||||||||| |||||||| ||||| |||| | | ||| | ||||| || ||||||
Sbjct: 342 gtctacactgtcttctctgctactgatgccaaacgtaatgccagagactcccatgttcct 401
Query: 297 attttggctccacttccaattgggtttgcagtttttatggttcacttggctaccataccc 356
|||||||| ||| | ||||||||||| || || || |||| ||||||||||| || ||
Sbjct: 402 attttggcaccattgccaattgggttcgccgtgttcttggtgcacttggctacaatccca 461
Query: 357 attactggtactggtattaacccagc 382
|| || || |||||||| ||||||||
Sbjct: 462 atcacaggaactggtatcaacccagc 487
>gi|218687819|gb|GH296334.1|GH296334 JCL784 Jatropha curcas total
leaf library Jatropha curcas cDNA, mRNA sequence
Length = 782
Score = 60.0 bits (30), Expect = 3e-09
Identities = 117/146 (80%)
Strand = Plus / Plus
Query: 237 gtctacactgttttctctgcaactgaccccaagagaagtgcacgtgactcacacgttcct 296
||||||||||| |||||||| ||||| |||| | | ||| | ||||| || ||||||
Sbjct: 411 gtctacactgtcttctctgctactgatgccaaacgtaatgccagagactcccatgttcct 470
Query: 297 attttggctccacttccaattgggtttgcagtttttatggttcacttggctaccataccc 356
|||||||| ||| | ||||||||||| || || || |||| ||||||||||| || ||
Sbjct: 471 attttggcaccattgccaattgggttcgccgtgttcttggtgcacttggctacaatccca 530
Query: 357 attactggtactggtattaacccagc 382
|| || || |||||||| ||||||||
Sbjct: 531 atcacaggaactggtatcaacccagc 556
>gi|218687859|gb|GH295841.1|GH295841 JCL290 Jatropha curcas total
leaf library Jatropha curcas cDNA, mRNA sequence
Length = 826
Score = 60.0 bits (30), Expect = 3e-09
Identities = 117/146 (80%)
Strand = Plus / Plus
Query: 237 gtctacactgttttctctgcaactgaccccaagagaagtgcacgtgactcacacgttcct 296
||||||||||| |||||||| ||||| |||| | | ||| | ||||| || ||||||
Sbjct: 342 gtctacactgtcttctctgctactgatgccaaacgtaatgccagagactcccatgttcct 401
Query: 297 attttggctccacttccaattgggtttgcagtttttatggttcacttggctaccataccc 356
|||||||| ||| | ||||||||||| || || || |||| ||||||||||| || ||
Sbjct: 402 attttggcaccattgccaattgggttcgccgtgttcttggtgcacttggctacaatccca 461
Query: 357 attactggtactggtattaacccagc 382
|| || || |||||||| ||||||||
Sbjct: 462 atcacaggaactggtatcaacccagc 487
>gi|268519832|gb|FM888299.1|FM888299 FM888299 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001685,
mRNA sequence
Length = 339
Score = 52.0 bits (26), Expect = 6e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 412 acaatgataaagtctgggatgatcat 437
||||||||||||||||||||||||||
Sbjct: 4 acaatgataaagtctgggatgatcat 29