Jatropha Genome Database
- JcCB0829751.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0829751.10 - phase: 2 /pseudo/partial
(502 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268524764|gb|FM895462.1|FM895462 FM895462 Jatropha curcas emb... 848 0.0
gi|237680920|gb|GO247111.1|GO247111 JcrME_RL0655 Expressed seque... 565 e-161
gi|237680717|gb|GO246868.1|GO246868 JcrME_RL0412 Expressed seque... 472 e-133
gi|268525555|gb|FM890810.1|FM890810 FM890810 Jatropha curcas emb... 408 e-114
gi|268517259|gb|FM893607.1|FM893607 FM893607 Jatropha curcas emb... 280 1e-75
gi|268519315|gb|FM887782.1|FM887782 FM887782 Jatropha curcas emb... 246 2e-65
>gi|268524764|gb|FM895462.1|FM895462 FM895462 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002384,
mRNA sequence
Length = 634
Score = 848 bits (428), Expect = 0.0
Identities = 428/428 (100%)
Strand = Plus / Plus
Query: 75 cccaatacattacccatgagaatcctgacaagggaacccagcttctttgcccaggcaagg 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 cccaatacattacccatgagaatcctgacaagggaacccagcttctttgcccaggcaagg 226
Query: 135 tcaagatgccaatattaacagtttggatggaagtggaggctcaaaaatttgaaccagcag 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 tcaagatgccaatattaacagtttggatggaagtggaggctcaaaaatttgaaccagcag 286
Query: 195 cctcaaagctcaactgggaagtgtttttgaagccaatttttggtttgacaacggattcag 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 cctcaaagctcaactgggaagtgtttttgaagccaatttttggtttgacaacggattcag 346
Query: 255 ctgcagtagaggcgaatgaagctgagctttctaaggttcttgatgtttatgaggcaagac 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ctgcagtagaggcgaatgaagctgagctttctaaggttcttgatgtttatgaggcaagac 406
Query: 315 tagctcaatctaagtacttggcttgtgattgcttcactttggtagatctacaccacttgc 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tagctcaatctaagtacttggcttgtgattgcttcactttggtagatctacaccacttgc 466
Query: 375 ctaacttacagctgctgttattgacacaaagcaagaaattgatcgagtcaagacctcatg 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ctaacttacagctgctgttattgacacaaagcaagaaattgatcgagtcaagacctcatg 526
Query: 435 ttagcgcatgggctgctgatattacagcaagaccagcttgggctaaggttcttgctatgc 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 ttagcgcatgggctgctgatattacagcaagaccagcttgggctaaggttcttgctatgc 586
Query: 495 agaagaag 502
||||||||
Sbjct: 587 agaagaag 594
>gi|237680920|gb|GO247111.1|GO247111 JcrME_RL0655 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 634
Score = 565 bits (285), Expect = e-161
Identities = 291/293 (99%)
Strand = Plus / Plus
Query: 75 cccaatacattacccatgagaatcctgacaagggaacccagcttctttgcccaggcaagg 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 cccaatacattacccatgagaatcctgacaagggaacccagcttctttgcccaggcaagg 331
Query: 135 tcaagatgccaatattaacagtttggatggaagtggaggctcaaaaatttgaaccagcag 194
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 332 tcaagatgccaatattaacagtttggatggaggcggaggctcaaaaatttgaaccagcag 391
Query: 195 cctcaaagctcaactgggaagtgtttttgaagccaatttttggtttgacaacggattcag 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 cctcaaagctcaactgggaagtgtttttgaagccaatttttggtttgacaacggattcag 451
Query: 255 ctgcagtagaggcgaatgaagctgagctttctaaggttcttgatgtttatgaggcaagac 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ctgcagtagaggcgaatgaagctgagctttctaaggttcttgatgtttatgaggcaagac 511
Query: 315 tagctcaatctaagtacttggcttgtgattgcttcactttggtagatctacac 367
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tagctcaatctaagtacttggcttgtgattgcttcactttggtagatctacac 564
>gi|237680717|gb|GO246868.1|GO246868 JcrME_RL0412 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 681
Score = 472 bits (238), Expect = e-133
Identities = 308/318 (96%), Gaps = 10/318 (3%)
Strand = Plus / Plus
Query: 75 cccaatacattacccatgagaatcctgacaagggaacccagcttctttgcccaggcaagg 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 cccaatacattacccatgagaatcctgacaagggaacccagcttctttgcccaggcaagg 333
Query: 135 tcaagatgccaatattaacagtttggatggaagtggaggctcaaaaatttgaaccagcag 194
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 334 tcaagatgccaatattaacagtttggatggaagtggaggctc-aaaatttgaaccagcag 392
Query: 195 cctcaaagctcaactgggaagtgtttttgaagccaatttttggtttgacaacggattcag 254
|||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 393 cctc-aagctcaactgggaagtgtttttgaag-caatttttggtttgac-acggattcag 449
Query: 255 ctgcagtagaggcgaatgaagctgagctttctaaggttcttgatgtttatgaggcaagac 314
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 450 ctgcagtagaggcgaatgaagctgagctttctaagg-tcttgatg-ttatgaggcaagac 507
Query: 315 tagctcaatctaagtacttggcttgtgattgcttcactttggtagatctacaccacttgc 374
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 508 tagctc-atctaagtacttggcttgtgattgc-tcactttggtagatctacaccacttg- 564
Query: 375 ctaacttacagctgctgt 392
||||| ||||||||||||
Sbjct: 565 ctaac-tacagctgctgt 581
>gi|268525555|gb|FM890810.1|FM890810 FM890810 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_000752,
mRNA sequence
Length = 472
Score = 408 bits (206), Expect = e-114
Identities = 206/206 (100%)
Strand = Plus / Plus
Query: 75 cccaatacattacccatgagaatcctgacaagggaacccagcttctttgcccaggcaagg 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cccaatacattacccatgagaatcctgacaagggaacccagcttctttgcccaggcaagg 326
Query: 135 tcaagatgccaatattaacagtttggatggaagtggaggctcaaaaatttgaaccagcag 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tcaagatgccaatattaacagtttggatggaagtggaggctcaaaaatttgaaccagcag 386
Query: 195 cctcaaagctcaactgggaagtgtttttgaagccaatttttggtttgacaacggattcag 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cctcaaagctcaactgggaagtgtttttgaagccaatttttggtttgacaacggattcag 446
Query: 255 ctgcagtagaggcgaatgaagctgag 280
||||||||||||||||||||||||||
Sbjct: 447 ctgcagtagaggcgaatgaagctgag 472
>gi|268517259|gb|FM893607.1|FM893607 FM893607 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_004491,
mRNA sequence
Length = 397
Score = 280 bits (141), Expect = 1e-75
Identities = 141/141 (100%)
Strand = Plus / Plus
Query: 75 cccaatacattacccatgagaatcctgacaagggaacccagcttctttgcccaggcaagg 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 cccaatacattacccatgagaatcctgacaagggaacccagcttctttgcccaggcaagg 316
Query: 135 tcaagatgccaatattaacagtttggatggaagtggaggctcaaaaatttgaaccagcag 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tcaagatgccaatattaacagtttggatggaagtggaggctcaaaaatttgaaccagcag 376
Query: 195 cctcaaagctcaactgggaag 215
|||||||||||||||||||||
Sbjct: 377 cctcaaagctcaactgggaag 397
>gi|268519315|gb|FM887782.1|FM887782 FM887782 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001048,
mRNA sequence
Length = 294
Score = 246 bits (124), Expect = 2e-65
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 379 cttacagctgctgttattgacacaaagcaagaaattgatcgagtcaagacctcatgttag 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 cttacagctgctgttattgacacaaagcaagaaattgatcgagtcaagacctcatgttag 64
Query: 439 cgcatgggctgctgatattacagcaagaccagcttgggctaaggttcttgctatgcagaa 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcatgggctgctgatattacagcaagaccagcttgggctaaggttcttgctatgcagaa 124
Query: 499 gaag 502
||||
Sbjct: 125 gaag 128