Jatropha Genome Database

JcCB0821811.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0821811.10 - phase: 2 /partial
         (1390 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|237679862|gb|GO247167.1|GO247167 JcrME_RL0711 Expressed seque...   299   4e-81
gi|268519759|gb|FM888226.1|FM888226 FM888226 Jatropha curcas emb...   129   9e-30

>gi|237679862|gb|GO247167.1|GO247167 JcrME_RL0711 Expressed sequence
            tags from Jatropha curcas root cDNA library Jatropha
            curcas cDNA, mRNA sequence
          Length = 619

 Score =  299 bits (151), Expect = 4e-81
 Identities = 427/519 (82%)
 Strand = Plus / Plus

                                                                        
Query: 526  tatagctgatgtgtttccttccttaaaatggcttccttcagtcaagagggaagagtctag 585
            ||||| |||| | ||||||||| || ||||||||||| | | ||||||||||   || ||
Sbjct: 91   tatagttgatatctttccttccctacaatggcttcctactgccaagagggaaagatcaag 150

                                                                        
Query: 586  agttttgaaattgcatcacgaaacagataagatccttgaagatatcttacaagagcataa 645
            | ||| ||||||||| ||  | |||||| |||| || |||||||||||||||||||||| 
Sbjct: 151  aatttggaaattgcaccaaaatacagatgagattctcgaagatatcttacaagagcatag 210

                                                                        
Query: 646  agcaaataagcagtcgtgggtttcagaggatggcgatgggaggaaagcagacaattttgt 705
            ||| || |  ||| ||   | |||  || || | ||| ||||  |||| || ||| || |
Sbjct: 211  agctaaaagacaggcgacagcttccaagaattgggataggagcgaagctgataatcttct 270

                                                                        
Query: 706  tgatgttcttctggaccttcaacaaagtggaaatcttgattttccgttgactgacgtcac 765
            |||||||||| |||| |||||||| || |||||||||||| |||| || ||||| ||| |
Sbjct: 271  tgatgttcttttggatcttcaacagagcggaaatcttgatgttcctttaactgatgtcgc 330

                                                                        
Query: 766  cattaaagcgtcaaccattgatgtttttgtgggtggaagtgacacatcctcaaaaactac 825
            ||| |||||  |||  |||||| | ||||  | |||||| |||||||||||||||||| |
Sbjct: 331  catcaaagcagcaattattgatatgtttggtgctggaagcgacacatcctcaaaaactgc 390

                                                                        
Query: 826  agaatgggcaatggcagagttgatgaggaaaccggaaataatgaaaaaagcacaagaaga 885
            ||||||||||||||| |||||||||||||| || ||| ||||||| ||||||||||||||
Sbjct: 391  agaatgggcaatggctgagttgatgaggaatccagaagtaatgaagaaagcacaagaaga 450

                                                                        
Query: 886  attgcgcagtgtctttggtgaaaaaggatacattgaggaggcaaaacttcaagaattaaa 945
            |||||| | | ||||||||||||| ||| |   |||||| ||||||||||| ||||||||
Sbjct: 451  attgcggaatttctttggtgaaaatggaaaggatgaggaagcaaaacttcacgaattaaa 510

                                                                        
Query: 946  atggttgaagttaattattaaagaaacattgagattacatcctgtactttcactacttcc 1005
            |||| | ||||||||||||||||||||||||||||||||||||| | |  |  || ||||
Sbjct: 511  atggataaagttaattattaaagaaacattgagattacatcctgcagtggctgtaattcc 570

                                                   
Query: 1006 aagggtttgtaagcaaaagactaaagttagtggatatga 1044
            ||||||||||| | ||||||||||||||  |||||||||
Sbjct: 571  aagggtttgtagggaaaagactaaagtttatggatatga 609


>gi|268519759|gb|FM888226.1|FM888226 FM888226 Jatropha curcas embryo
            35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001583,
            mRNA sequence
          Length = 258

 Score =  129 bits (65), Expect = 9e-30
 Identities = 95/105 (90%)
 Strand = Plus / Minus

                                                                        
Query: 1278 actggaaatttcctaaaggagtaactgcagagaaccttgacatgactgatgcttttggag 1337
            ||||||||||||||||||||||||||||||| || |||||||||| ||| ||||||||||
Sbjct: 219  actggaaatttcctaaaggagtaactgcagaaaatcttgacatgaatgaagcttttggag 160

                                                         
Query: 1338 gagttatgagaagaaaagtagaccttgaactgattcccattccat 1382
            ||| | | | ||||||||||||||||||| |||| ||||||||||
Sbjct: 159  gagctgtcaaaagaaaagtagaccttgaattgatccccattccat 115