Jatropha Genome Database

JcCB0819391.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0819391.10 - phase: 1 /partial
         (485 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268524168|gb|FM894847.1|FM894847 FM894847 Jatropha curcas emb...   896   0.0  

>gi|268524168|gb|FM894847.1|FM894847 FM894847 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_000734,
           mRNA sequence
          Length = 485

 Score =  896 bits (452), Expect = 0.0
 Identities = 474/480 (98%), Gaps = 6/480 (1%)
 Strand = Plus / Plus

                                                                       
Query: 3   ggaagtatagagttgcactggatagtgatgcatgggaatttggaggacaaggaagg---- 58
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 7   ggaagtata-agttgcactggatagtgatgcatgggaatttggaggacaaggaagggtca 65

                                                                       
Query: 59  -ccatgaggcagaacattttacatctcctgaagggatacctggagtggctgaaacaaatt 117
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  gccatgaggcagaacattttacatctcctgaagggatacctggagtggctgaaacaaatt 125

                                                                       
Query: 118 tcaacaatcgtccgaactccttcaaagtactttccccagctcgcacatgtgtggcttatt 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 tcaacaatcgtccgaactccttcaaagtactttccccagctcgcacatgtgtggcttatt 185

                                                                       
Query: 178 acagagttgacgaaagccaagaaattaacaatggaggcaatctgggcgctgttgatgaga 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 acagagttgacgaaagccaagaaattaacaatggaggcaatctgggcgctgttgatgaga 245

                                                                       
Query: 238 cattgacagctgatgctgtagagaagctagaggtttctgaagaagttgtcaagcagaact 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 cattgacagctgatgctgtagagaagctagaggtttctgaagaagttgtcaagcagaact 305

                                                                       
Query: 298 tagccacagatacaatggaaaagaaggacaatttggaagaagtaaacaccaagaaattag 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tagccacagatacaatggaaaagaaggacaatttggaagaagtaaacaccaagaaattag 365

                                                                       
Query: 358 ctgcagatactgcggtgaaccaggaggatattaaagaacctgctgattcgacgatgaatg 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ctgcagatactgcggtgaaccaggaggatattaaagaacctgctgattcgacgatgaatg 425

                                                                       
Query: 418 gtgatgctggtccaactatggcagggaatgtagaagcagaagagattgagggagggaaat 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gtgatgctggtccaactatggcagggaatgtagaagcagaagagattgagggagggaaat 485