Jatropha Genome Database

JcCB0815741.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0815741.10 + phase: 1 /TE/partial
         (1668 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268516533|gb|FM889693.1|FM889693 FM889693 Jatropha curcas emb...   541   e-154

>gi|268516533|gb|FM889693.1|FM889693 FM889693 Jatropha curcas embryo
            35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003410,
            mRNA sequence
          Length = 544

 Score =  541 bits (273), Expect = e-154
 Identities = 337/357 (94%), Gaps = 1/357 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1082 tggaggaagtagatattttctaaccttcattgatgatttctcacgaaaaacatggatatg 1141
            |||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||| 
Sbjct: 364  tggaggaagtaggtattttctaaccttcattgatgatttctcgcgaaaaacattgatata 305

                                                                        
Query: 1142 tttgttgcgcacaaaggaccaagtattcaagcactttcagcaattcc-atgcgatggtgg 1200
            ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 304  tttgttgcgcacaaaagaccaagtattcaagcactttcagcaattcccatgcgatggtgg 245

                                                                        
Query: 1201 aaagggagactggagtggcgttgaagtgtttgcgcacggataatggtggtgaatacatct 1260
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 244  aaagggagactggagtggcattgaagtgtttgcgcacggataatggtggtgaatacatct 185

                                                                        
Query: 1261 ttaaggagtttagagattattgtagtcagcatggtatcaggcatgaaaagacagttcccg 1320
             |||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
Sbjct: 184  ctaaggagtttagagattattgtagtcagcacggtatcaggcatgaaaagacagtacctg 125

                                                                        
Query: 1321 gtacgcctcaacacaacggcgttgctgaacgaataaatcacaccattgttgaaagagtca 1380
             |||||||||||| || || |||| ||||||||| |||| |||||||||||| |||||||
Sbjct: 124  ttacgcctcaacataatggtgttgttgaacgaatgaatcgcaccattgttgagagagtca 65

                                                                     
Query: 1381 gatccatgcttaaaatggccaacttacctaagccattttggggagaagctgtcaata 1437
            |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64   gatccatgctcaaaatggccaacttacctaagccattttggggagaagctgtcaata 8