Jatropha Genome Database
- JcCB0733091.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0733091.10 - phase: 2 /partial
(223 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268518587|gb|FM888830.1|FM888830 FM888830 Jatropha curcas emb... 283 4e-77
gi|262090681|gb|GT229039.1|GT229039 JC604 Jatropha seeds from fr... 250 6e-67
gi|237680382|gb|GO246594.1|GO246594 JcrME_RL0138 Expressed seque... 242 1e-64
gi|268523517|gb|FM893840.1|FM893840 FM893840 Jatropha curcas emb... 52 3e-07
>gi|268518587|gb|FM888830.1|FM888830 FM888830 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002327,
mRNA sequence
Length = 354
Score = 283 bits (143), Expect = 4e-77
Identities = 143/143 (100%)
Strand = Plus / Plus
Query: 81 ctatattcatctttgtcaggaatgttttgccacccaccgctgccatgatgtcagcaattt 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ctatattcatctttgtcaggaatgttttgccacccaccgctgccatgatgtcagcaattt 61
Query: 141 atgaagaaaacaaagatgaggatggtttcctgtatatgacctatagcggcgagaacacat 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 atgaagaaaacaaagatgaggatggtttcctgtatatgacctatagcggcgagaacacat 121
Query: 201 ttggattatcaatgaaggtacag 223
|||||||||||||||||||||||
Sbjct: 122 ttggattatcaatgaaggtacag 144
>gi|262090681|gb|GT229039.1|GT229039 JC604 Jatropha seeds from
fruits at three stages of maturation Jatropha curcas
cDNA clone PL13SE.B09.scf 5', mRNA sequence
Length = 486
Score = 250 bits (126), Expect = 6e-67
Identities = 180/198 (90%)
Strand = Plus / Minus
Query: 8 gttccagctgatctgactgttggccagtttgtttatgtggttcgaaagagaataaagctc 67
||||| ||||||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct: 385 gttcctgctgatctgacagtcggccagttcgtttatgtggttcgaaagagaataaagctc 326
Query: 68 agcgctgagaaggctatattcatctttgtcaggaatgttttgccacccaccgctgccatg 127
||||||||||||||||||||||||||||||| ||| |||||||||| || ||||| |||
Sbjct: 325 agcgctgagaaggctatattcatctttgtcaaaaatattttgccaccaactgctgctatg 266
Query: 128 atgtcagcaatttatgaagaaaacaaagatgaggatggtttcctgtatatgacctatagc 187
|||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 265 atgtcagcgatttacgaggaaaacaaagatgaggatggtttcctgtacatgacctacagt 206
Query: 188 ggcgagaacacatttgga 205
|| ||||| |||||||||
Sbjct: 205 ggtgagaatacatttgga 188
>gi|237680382|gb|GO246594.1|GO246594 JcrME_RL0138 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 638
Score = 242 bits (122), Expect = 1e-64
Identities = 179/198 (90%)
Strand = Plus / Plus
Query: 8 gttccagctgatctgactgttggccagtttgtttatgtggttcgaaagagaataaagctc 67
||||| ||||||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct: 272 gttcctgctgatctgacagtcggccagttcgtttatgtggttcgaaagagaataaagctc 331
Query: 68 agcgctgagaaggctatattcatctttgtcaggaatgttttgccacccaccgctgccatg 127
||||||||||||||||||||||||||||||| ||| |||||||||| || ||||| |||
Sbjct: 332 agcgctgagaaggctatattcatctttgtcaaaaatattttgccaccaactgctgctatg 391
Query: 128 atgtcagcaatttatgaagaaaacaaagatgaggatggtttcctgtatatgacctatagc 187
|||||||| ||||| || ||||||||||||||||||||||||||| | |||||||| ||
Sbjct: 392 atgtcagcgatttacgaggaaaacaaagatgaggatggtttcctgcacatgacctacagt 451
Query: 188 ggcgagaacacatttgga 205
|| ||||| |||||||||
Sbjct: 452 ggtgagaatacatttgga 469
>gi|268523517|gb|FM893840.1|FM893840 FM893840 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_004769,
mRNA sequence
Length = 559
Score = 52.0 bits (26), Expect = 3e-07
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 11 ccagctgatctgactgttggccagtttgtttatgtggttcgaaagagaat 60
|||||||| ||||| ||||| ||||||||||||||| | || ||||||||
Sbjct: 217 ccagctgacctgacagttggtcagtttgtttatgtgatccggaagagaat 266