Jatropha Genome Database

JcCB0683911.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0683911.10 + phase: 0 /pseudo/partial
         (718 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268522432|gb|FM894577.1|FM894577 FM894577 Jatropha curcas emb...   224   1e-58
gi|237680582|gb|GO246794.1|GO246794 JcrME_RL0338 Expressed seque...   163   3e-40

>gi|268522432|gb|FM894577.1|FM894577 FM894577 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_000366,
           mRNA sequence
          Length = 483

 Score =  224 bits (113), Expect = 1e-58
 Identities = 134/137 (97%), Gaps = 3/137 (2%)
 Strand = Plus / Plus

                                                                       
Query: 64  gttatagccatcagagatgtaattcctcctcctttaagaagagaatttactgatgtctac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gttatagccatcagagatgtaattcctcctcctttaagaagagaatttactgatgtctac 406

                                                                       
Query: 124 attgccatggagctca-tggacactgatcttcatcagatt-atacgctcgaatcaaag-t 180
           |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 407 attgccatggagctcattggacactgatcttcatcagattaatacgctcgaatcaaagtt 466

                            
Query: 181 ttgtcagaggagcattg 197
           |||||||||||||||||
Sbjct: 467 ttgtcagaggagcattg 483


>gi|237680582|gb|GO246794.1|GO246794 JcrME_RL0338 Expressed sequence
           tags from Jatropha curcas root cDNA library Jatropha
           curcas cDNA, mRNA sequence
          Length = 643

 Score =  163 bits (82), Expect = 3e-40
 Identities = 114/122 (93%), Gaps = 2/122 (1%)
 Strand = Plus / Minus

                                                                       
Query: 599 ttcggcaactcagtccacatcctcgtcagccatta-gcccaaattttccctcatgttcat 657
           |||| ||||||||||||||||||  ||||||| || ||||||||||||||||||||||||
Sbjct: 643 ttcgccaactcagtccacatcctgttcagccaataagcccaaattttccctcatgttcat 584

                                                                       
Query: 658 ccattggccattgatcttattgatag-aatgttgacatttgatcccacaaaaagaattac 716
           |||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||
Sbjct: 583 ccattggccattgatcttattgatagaaatgttgaccattgatcccacaaaaagaattac 524

             
Query: 717 tg 718
           ||
Sbjct: 523 tg 522