Jatropha Genome Database
- JcCB0646891.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0646891.10 - phase: 0 /partial
(216 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268516676|gb|FM890383.1|FM890383 FM890383 Jatropha curcas emb... 365 e-101
gi|268516480|gb|FM889640.1|FM889640 FM889640 Jatropha curcas emb... 291 2e-79
gi|268520570|gb|FM889328.1|FM889328 FM889328 Jatropha curcas emb... 283 4e-77
gi|268525875|gb|FM891131.1|FM891131 FM891131 Jatropha curcas emb... 208 2e-54
gi|268517648|gb|FM893617.1|FM893617 FM893617 Jatropha curcas emb... 198 2e-51
>gi|268516676|gb|FM890383.1|FM890383 FM890383 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_004229,
mRNA sequence
Length = 199
Score = 365 bits (184), Expect = e-101
Identities = 184/184 (100%)
Strand = Plus / Plus
Query: 1 gagaagaacccacgccggatctttgagggtgaggctcttctccgcaggatgaatagatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 gagaagaacccacgccggatctttgagggtgaggctcttctccgcaggatgaatagatat 75
Query: 61 ggtcttttggatgagagtcaaaacaagcttgattatgtgttggctttgactgtggagaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 ggtcttttggatgagagtcaaaacaagcttgattatgtgttggctttgactgtggagaac 135
Query: 121 tttcttgagcgtcgcctgcagacacttgttttcaagtctggtatggctaagtctatccac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 tttcttgagcgtcgcctgcagacacttgttttcaagtctggtatggctaagtctatccac 195
Query: 181 catg 184
||||
Sbjct: 196 catg 199
>gi|268516480|gb|FM889640.1|FM889640 FM889640 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003346,
mRNA sequence
Length = 152
Score = 291 bits (147), Expect = 2e-79
Identities = 150/151 (99%)
Strand = Plus / Plus
Query: 34 gctcttctccgcaggatgaatagatatggtcttttggatgagagtcaaaacaagcttgat 93
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gctcttctccgcaggatgaatagatatggtcttttggatgagagtcaaaacaagcttgat 61
Query: 94 tatgtgttggctttgactgtggagaactttcttgagcgtcgcctgcagacacttgttttc 153
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 62 tatgtgttggctttgactgtggagaactttcttgaccgtcgcctgcagacacttgttttc 121
Query: 154 aagtctggtatggctaagtctatccaccatg 184
|||||||||||||||||||||||||||||||
Sbjct: 122 aagtctggtatggctaagtctatccaccatg 152
>gi|268520570|gb|FM889328.1|FM889328 FM889328 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002962,
mRNA sequence
Length = 160
Score = 283 bits (143), Expect = 4e-77
Identities = 157/159 (98%), Gaps = 2/159 (1%)
Strand = Plus / Plus
Query: 28 ggtgaggctcttctccg-cagg-atgaatagatatggtcttttggatgagagtcaaaaca 85
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 2 ggtgaggctcttctccgacagggatgaatagatatggtcttttggatgagagtcaaaaca 61
Query: 86 agcttgattatgtgttggctttgactgtggagaactttcttgagcgtcgcctgcagacac 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 agcttgattatgtgttggctttgactgtggagaactttcttgagcgtcgcctgcagacac 121
Query: 146 ttgttttcaagtctggtatggctaagtctatccaccatg 184
|||||||||||||||||||||||||||||||||||||||
Sbjct: 122 ttgttttcaagtctggtatggctaagtctatccaccatg 160
>gi|268525875|gb|FM891131.1|FM891131 FM891131 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb1_001109,
mRNA sequence
Length = 537
Score = 208 bits (105), Expect = 2e-54
Identities = 186/213 (87%)
Strand = Plus / Plus
Query: 1 gagaagaacccacgccggatctttgagggtgaggctcttctccgcaggatgaatagatat 60
||||| |||||||| || || ||||||||||| || ||||| | |||||||||||||||
Sbjct: 273 gagaaaaacccacgtcgtatttttgagggtgaagcacttctgaggaggatgaatagatat 332
Query: 61 ggtcttttggatgagagtcaaaacaagcttgattatgtgttggctttgactgtggagaac 120
||||||||||||||||| || ||||| || |||||||||||||| |||||||||||||||
Sbjct: 333 ggtcttttggatgagagccagaacaaactcgattatgtgttggccttgactgtggagaac 392
Query: 121 tttcttgagcgtcgcctgcagacacttgttttcaagtctggtatggctaagtctatccac 180
||||||||||| || || || || ||||| |||||||| |||||||| ||||| ||||||
Sbjct: 393 tttcttgagcgccgtcttcaaactcttgtgttcaagtcgggtatggccaagtcaatccac 452
Query: 181 catgctcgagtgcttattaggcagaggcatatt 213
||||| ||||||| |||||||| |||||||||
Sbjct: 453 catgccagagtgctcattaggcaaaggcatatt 485
>gi|268517648|gb|FM893617.1|FM893617 FM893617 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_004507,
mRNA sequence
Length = 551
Score = 198 bits (100), Expect = 2e-51
Identities = 187/216 (86%)
Strand = Plus / Plus
Query: 1 gagaagaacccacgccggatctttgagggtgaggctcttctccgcaggatgaatagatat 60
||||| |||||||| || || ||||||||||| || || || | |||||||||||||||
Sbjct: 239 gagaaaaacccacgtcgtatttttgagggtgaagcactgctgaggaggatgaatagatat 298
Query: 61 ggtcttttggatgagagtcaaaacaagcttgattatgtgttggctttgactgtggagaac 120
|| |||||||||||||| || ||||| || |||||||||||||| |||||||||||||||
Sbjct: 299 ggacttttggatgagagccagaacaaactcgattatgtgttggccttgactgtggagaac 358
Query: 121 tttcttgagcgtcgcctgcagacacttgttttcaagtctggtatggctaagtctatccac 180
||||||||||| || || || || ||||| ||||||||||||||||||||||||||||||
Sbjct: 359 tttcttgagcgccgtcttcaaactcttgtgttcaagtctggtatggctaagtctatccac 418
Query: 181 catgctcgagtgcttattaggcagaggcatattagg 216
|| || ||||||| || ||||| ||||| ||||||
Sbjct: 419 cacgccagagtgctcatcaggcaaaggcacattagg 454