Jatropha Genome Database

JcCB0603701.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0603701.10 - phase: 0 /partial
         (408 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268523745|gb|FM892278.1|FM892278 FM892278 Jatropha curcas emb...   446   e-126
gi|268517126|gb|FM892678.1|FM892678 FM892678 Jatropha curcas emb...    56   3e-08

>gi|268523745|gb|FM892278.1|FM892278 FM892278 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb1_002793,
           mRNA sequence
          Length = 397

 Score =  446 bits (225), Expect = e-126
 Identities = 256/261 (98%), Gaps = 4/261 (1%)
 Strand = Plus / Plus

                                                                       
Query: 150 gtttgttctccaaaacgtgatggaaggaagatatcctggttcagaagatatcaagtca-a 208
           ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||  |
Sbjct: 5   gtttgttctccaaaa-gtgatggaaggaagatatc-tggttcagaagatatcaagtcgga 62

                                                                       
Query: 209 taaaaagagctcaagaattgttaagggaagtggaaacaaaaatgccttcacctgagctaa 268
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  taaaaagagctcaagaattgttaagggaagtggaaacaaaaatgccttcacctgagctaa 122

                                                                       
Query: 269 caggtatattagggtttaatcttgatgatcatgattttgttaaagggcttgaggaaatga 328
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 caggtatattagggtttaatcttgatgatcatgattttgttaaagggcttgaggaaatga 182

                                                                       
Query: 329 tggaagaatgggcaccagcaagatcaaagagacttcccatatttgaacaga-tctcttca 387
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 183 tggaagaatgggcaccagcaagatcaaagagacttcccatatttgaacagagtctcttca 242

                                
Query: 388 tttagagatcaattagcatgc 408
           |||||||||||||||||||||
Sbjct: 243 tttagagatcaattagcatgc 263


>gi|268517126|gb|FM892678.1|FM892678 FM892678 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_003286,
           mRNA sequence
          Length = 560

 Score = 56.0 bits (28), Expect = 3e-08
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                   
Query: 352 tcaaagagacttcccatatttgaacagatctcttcatttagagatcaattagcatg 407
           |||| |||||||||||| |||||| |||||||  ||| |||||||||| |||||||
Sbjct: 333 tcaaggagacttcccatttttgaagagatctcgccatatagagatcaactagcatg 388