Jatropha Genome Database

JcCB0580021.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0580021.10 + phase: 1 /partial
         (338 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268522655|gb|FM896696.1|FM896696 FM896696 Jatropha curcas emb...   557   e-159

>gi|268522655|gb|FM896696.1|FM896696 FM896696 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003975,
           mRNA sequence
          Length = 527

 Score =  557 bits (281), Expect = e-159
 Identities = 288/289 (99%), Gaps = 1/289 (0%)
 Strand = Plus / Minus

                                                                       
Query: 51  caagttgttaatccggatgaacttaaagatgatgaggaata-tgaagacatcttggaaga 109
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 527 caagttgttaatccggatgaacttaaagatgatgaggaataatgaagacatcttggaaga 468

                                                                       
Query: 110 tatgagaacagaaggcgggaaatttggtacgttggtgaatgttgttatcccacgcccaaa 169
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tatgagaacagaaggcgggaaatttggtacgttggtgaatgttgttatcccacgcccaaa 408

                                                                       
Query: 170 tgcagacagtgaagctttaccaggagtcgggaaggtgttcttggaatatgcagatataga 229
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tgcagacagtgaagctttaccaggagtcgggaaggtgttcttggaatatgcagatataga 348

                                                                       
Query: 230 aggtgctacaaaagcccgagcagggatgaatgggaggaaatttggtggtaatcaagttgt 289
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 aggtgctacaaaagcccgagcagggatgaatgggaggaaatttggtggtaatcaagttgt 288

                                                            
Query: 290 ggctgtttattttccagagaacaagttctatcagggagaatatgatggc 338
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ggctgtttattttccagagaacaagttctatcagggagaatatgatggc 239