Jatropha Genome Database

JcCB0578941.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0578941.10 - phase: 1 /pseudo/partial
         (565 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268523821|gb|FM890507.1|FM890507 FM890507 Jatropha curcas emb...   250   1e-66
gi|262091000|gb|GT229358.1|GT229358 JC923 Jatropha seeds from fr...   153   3e-37

>gi|268523821|gb|FM890507.1|FM890507 FM890507 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_000178,
           mRNA sequence
          Length = 545

 Score =  250 bits (126), Expect = 1e-66
 Identities = 137/140 (97%), Gaps = 3/140 (2%)
 Strand = Plus / Minus

                                                                       
Query: 426 acaactcctgttagtaaactggagtctccaagaattgcaagcacaatgggatctgttgct 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 acaactcctgttagtaaactggagtctccaagaattgcaagcacaatgggatctgttgct 486

                                                                       
Query: 486 gcaacaaccatgataccatctgcagtgccccaagctcgaaaggcgtccttagctcggttt 545
           |||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||
Sbjct: 485 gcaacaaccatgataccatct---gtgccccaagctcgaaaggcgtccttagctcggttt 429

                               
Query: 546 ttggagaagcgcaaggagag 565
           ||||||||||||||||||||
Sbjct: 428 ttggagaagcgcaaggagag 409


>gi|262091000|gb|GT229358.1|GT229358 JC923 Jatropha seeds from
           fruits at three stages of maturation Jatropha curcas
           cDNA clone PL22SE.G02.scf 5', mRNA sequence
          Length = 548

 Score =  153 bits (77), Expect = 3e-37
 Identities = 77/77 (100%)
 Strand = Plus / Plus

                                                                       
Query: 489 acaaccatgataccatctgcagtgccccaagctcgaaaggcgtccttagctcggtttttg 548
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  acaaccatgataccatctgcagtgccccaagctcgaaaggcgtccttagctcggtttttg 121

                            
Query: 549 gagaagcgcaaggagag 565
           |||||||||||||||||
Sbjct: 122 gagaagcgcaaggagag 138