Jatropha Genome Database

JcCB0577381.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0577381.10 + phase: 0 /pseudo/partial
         (332 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268517581|gb|FM889292.1|FM889292 FM889292 Jatropha curcas emb...   293   6e-80

>gi|268517581|gb|FM889292.1|FM889292 FM889292 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002918,
           mRNA sequence
          Length = 600

 Score =  293 bits (148), Expect = 6e-80
 Identities = 181/187 (96%), Gaps = 5/187 (2%)
 Strand = Plus / Plus

                                                                       
Query: 15  cagctttccaacgtggaagtctggttcctagcgacctaaagtacattgtagtcgaaaatt 74
           |||||||||||||||||||||||||||| |||||||||||| |||||||   ||||||||
Sbjct: 172 cagctttccaacgtggaagtctggttcc-agcgacctaaag-acattgtg--cgaaaatt 227

                                                                       
Query: 75  gttatcaggagatttggaccttggaattgt-ggttttgatacagtcaatgaatatggacg 133
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 228 gttatcaggagatttggaccttggaattgttggttttgatacagtcaatgaatatggacg 287

                                                                       
Query: 134 ggggaatgaagatcttatcattgttcatgatgctcttgagtatggggattgccgtttatc 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ggggaatgaagatcttatcattgttcatgatgctcttgagtatggggattgccgtttatc 347

                  
Query: 194 ccttgca 200
           |||||||
Sbjct: 348 ccttgca 354



 Score =  149 bits (75), Expect = 2e-36
 Identities = 81/83 (97%)
 Strand = Plus / Plus

                                                                       
Query: 250 attcctaaatatgggattttcgaaaatataaattcaattggagagctgggcaaaatgcct 309
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 355 attcctaaatatgggattttcgaaaatataaattcaattggagagctggcaaaaatgcct 414

                                  
Query: 310 caatggacagctgagaaacccct 332
           |||||||||||||||||||||||
Sbjct: 415 caatggacagctgagaaacccct 437