Jatropha Genome Database

JcCB0575581.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0575581.10 + phase: 1 /partial
         (782 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|237679839|gb|GO247144.1|GO247144 JcrME_RL0688 Expressed seque...    54   2e-07
gi|268524659|gb|FM895357.1|FM895357 FM895357 Jatropha curcas emb...    54   2e-07
gi|268524920|gb|FM895618.1|FM895618 FM895618 Jatropha curcas emb...    54   2e-07

>gi|237679839|gb|GO247144.1|GO247144 JcrME_RL0688 Expressed sequence
           tags from Jatropha curcas root cDNA library Jatropha
           curcas cDNA, mRNA sequence
          Length = 654

 Score = 54.0 bits (27), Expect = 2e-07
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 381 ggtgcccgattcgccaaatggcgtgctgtacttaa 415
           ||||||||||| ||||||||||||||||| |||||
Sbjct: 472 ggtgcccgatttgccaaatggcgtgctgtgcttaa 506


>gi|268524659|gb|FM895357.1|FM895357 FM895357 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002165,
           mRNA sequence
          Length = 537

 Score = 54.0 bits (27), Expect = 2e-07
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 381 ggtgcccgattcgccaaatggcgtgctgtacttaa 415
           ||||||||||| ||||||||||||||||| |||||
Sbjct: 473 ggtgcccgatttgccaaatggcgtgctgtgcttaa 507


>gi|268524920|gb|FM895618.1|FM895618 FM895618 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002569,
           mRNA sequence
          Length = 613

 Score = 54.0 bits (27), Expect = 2e-07
 Identities = 90/111 (81%)
 Strand = Plus / Minus

                                                                       
Query: 468 ttggctcgttatgcaataatctgtcaggaaaatgggttagtgcctatcgtagagcctgaa 527
           |||||| | ||||| || ||||| ||||| ||||| || || || || || |||||||| 
Sbjct: 599 ttggctaggtatgccatcatctgccaggagaatggcttggtaccaattgtggagcctgag 540

                                                              
Query: 528 gttttgactgatggacctcacgacattaagaaatgtgctgctgtgactgag 578
            |||||  |||||||||||| ||||||||||| || |||| ||| ||||||
Sbjct: 539 attttggttgatggacctcatgacattaagaagtgcgctgatgtaactgag 489