Jatropha Genome Database

JcCB0571821.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0571821.10 + phase: 2 /partial
         (400 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268519345|gb|FM887812.1|FM887812 FM887812 Jatropha curcas emb...   591   e-169

>gi|268519345|gb|FM887812.1|FM887812 FM887812 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001083,
           mRNA sequence
          Length = 516

 Score =  591 bits (298), Expect = e-169
 Identities = 322/334 (96%)
 Strand = Plus / Plus

                                                                       
Query: 67  taaaaagctagtgccttataaagagagggaatggaaggtacctgataacaagagattcca 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   taaaaagctagtgccttataaagagagggaatggaaggtacctgataacaagagattcca 60

                                                                       
Query: 127 gcaaaagatgtggattagggagcttatgcgaggtagattgaatcacttgaagaccaataa 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gcaaaagatgtggattagggagcttatgcgaggtagattgaatcacttgaagaccaataa 120

                                                                       
Query: 187 gaagaataggtcaaaggttgatggtgataaatcaacttcaagtgtagattcccatcaaga 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaagaataggtcaaaggttgatggtgataaatcaacttcaagtgtagattcccatcaaga 180

                                                                       
Query: 247 tgggcaggtagagttcgaagaatcaaatgtcnnnnnnnnnnnnctatccaggcaggccaa 306
           |||||||||||||||||||||||||||||||            |||||||||||||||||
Sbjct: 181 tgggcaggtagagttcgaagaatcaaatgtcaaaaaagaaaaactatccaggcaggccaa 240

                                                                       
Query: 307 gaggaggcgtcgacaagcagaactcaagcttccagcatctcgacttgtagcatatcaaaa 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaggaggcgtcgacaagcagaactcaagcttccagcatctcgacttgtagcatatcaaaa 300

                                             
Query: 367 catacaatccaaagccaagggtaaaagaaagcac 400
           ||||||||||||||||||||||||||||||||||
Sbjct: 301 catacaatccaaagccaagggtaaaagaaagcac 334