Jatropha Genome Database

JcCB0569561.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0569561.10 + phase: 2 /partial
         (226 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|262090677|gb|GT229035.1|GT229035 JC600 Jatropha seeds from fr...    66   2e-11
gi|262090943|gb|GT229301.1|GT229301 JC866 Jatropha seeds from fr...    58   4e-09
gi|268520057|gb|FM889905.1|FM889905 FM889905 Jatropha curcas emb...    50   1e-06
gi|262091357|gb|GT228784.1|GT228784 JC349 Jatropha seeds from fr...    48   4e-06

>gi|262090677|gb|GT229035.1|GT229035 JC600 Jatropha seeds from
           fruits at three stages of maturation Jatropha curcas
           cDNA clone PL13SE.D12.scf 5', mRNA sequence
          Length = 540

 Score = 65.9 bits (33), Expect = 2e-11
 Identities = 75/89 (84%)
 Strand = Plus / Plus

                                                                       
Query: 80  tatgaagacaaagatggagactggatgcttgtaggagatgtgccttgggaaatgtttatc 139
           ||||| ||||| |||||||||||||||||| | ||||| || || ||||| ||||| |||
Sbjct: 262 tatgaggacaaggatggagactggatgcttcttggagacgtcccctgggagatgttgatc 321

                                        
Query: 140 gattcatgcaaacgattaagaataatgaa 168
           || ||||||||  || ||||||| |||||
Sbjct: 322 gagtcatgcaagagactaagaatcatgaa 350


>gi|262090943|gb|GT229301.1|GT229301 JC866 Jatropha seeds from
           fruits at three stages of maturation Jatropha curcas
           cDNA clone PL21SE.F09.scf 5', mRNA sequence
          Length = 465

 Score = 58.0 bits (29), Expect = 4e-09
 Identities = 80/97 (82%)
 Strand = Plus / Minus

                                                                       
Query: 54  tgaatggttctgagtatgtaccaacttatgaagacaaagatggagactggatgcttgtag 113
           ||||||| || |||||||| | ||| || || || || ||||| || ||||||||||| |
Sbjct: 424 tgaatggatcagagtatgtgctaacatacgaggataaggatggcgattggatgcttgttg 365

                                                
Query: 114 gagatgtgccttgggaaatgtttatcgattcatgcaa 150
           | |||||||| ||||| |||||||| ||| |||||||
Sbjct: 364 gggatgtgccatgggagatgtttattgatacatgcaa 328


>gi|268520057|gb|FM889905.1|FM889905 FM889905 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003658,
           mRNA sequence
          Length = 551

 Score = 50.1 bits (25), Expect = 1e-06
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                
Query: 68  tatgtaccaacttatgaagacaaagatggagactggatgcttgtaggagatgt 120
           ||||| || |||||||| |||||||||||||| |||||| | || ||||||||
Sbjct: 373 tatgtgcctacttatgaggacaaagatggagattggatgatggttggagatgt 321


>gi|262091357|gb|GT228784.1|GT228784 JC349 Jatropha seeds from
           fruits at three stages of maturation Jatropha curcas
           cDNA clone PL07SE.G03.scf 5', mRNA sequence
          Length = 270

 Score = 48.1 bits (24), Expect = 4e-06
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 77  acttatgaagacaaagatggagactggatgcttgtaggagatgt 120
           |||||||| |||||||||||||| |||||| | || ||||||||
Sbjct: 226 acttatgaggacaaagatggagattggatgatggttggagatgt 269