Jatropha Genome Database
- JcCB0543221.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0543221.10 - phase: 2 /partial
(449 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268524432|gb|FM895112.1|FM895112 FM895112 Jatropha curcas emb... 628 e-180
gi|268517230|gb|FM893578.1|FM893578 FM893578 Jatropha curcas emb... 186 1e-47
gi|268525649|gb|FM890904.1|FM890904 FM890904 Jatropha curcas emb... 107 1e-23
>gi|268524432|gb|FM895112.1|FM895112 FM895112 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_001684,
mRNA sequence
Length = 460
Score = 628 bits (317), Expect = e-180
Identities = 326/328 (99%), Gaps = 1/328 (0%)
Strand = Plus / Plus
Query: 117 ctaactataataagtctcttgagctgctcaatgaagctatgaataagggggactctgctt 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctaactataataagtctcttgagctgctcaatgaagctatgaataagggggactctgctt 60
Query: 177 ctgttgtcaagttgcagagcgccatcaagttcaatggtggaggtcatatcaaccactcca 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctgttgtcaagttgcagagcgccatcaagttcaatggtggaggtcatatcaaccactcca 120
Query: 237 ttttctggaagaatctcgcccctgttcgtgaaggaggtggtgaacctccgcatggttccc 296
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttt-ctggaagaatctcgcccctgttcgtgaaggaggtggtgaacctccgcatggttccc 179
Query: 297 ttggttgggcgattgatgaagattttggttctttggaaaagttgatccagaaaatcagca 356
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 180 ttggttgggcgattgatgaagatttnggttctttggaaaagttgatccagaaaatcagca 239
Query: 357 cagaaggtgctgctgtccaaggatctggatgggtgtggcttggtttggacaaagaagcaa 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 cagaaggtgctgctgtccaaggatctggatgggtgtggcttggtttggacaaagaagcaa 299
Query: 417 agaaacttgtagttgagacaactgcaaa 444
||||||||||||||||||||||||||||
Sbjct: 300 agaaacttgtagttgagacaactgcaaa 327
>gi|268517230|gb|FM893578.1|FM893578 FM893578 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_004448,
mRNA sequence
Length = 133
Score = 186 bits (94), Expect = 1e-47
Identities = 117/121 (96%), Gaps = 4/121 (3%)
Strand = Plus / Plus
Query: 77 atgcagcttcatcaccaaaagcaccaccagacttatattactaactataataagtctctt 136
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 17 atgcagcttcatcac--aaagcac-accagacttatattactaactataataagtctctt 73
Query: 137 gagctgctcaatgaagctatgaataagggggactctgcttctgttgtcaagttgcagagc 196
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 74 gagctgctcaatgaagctatgaataagggggactctgcttctgttgtc-agttgcagagc 132
Query: 197 g 197
|
Sbjct: 133 g 133
>gi|268525649|gb|FM890904.1|FM890904 FM890904 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_000863,
mRNA sequence
Length = 525
Score = 107 bits (54), Expect = 1e-23
Identities = 54/54 (100%)
Strand = Plus / Minus
Query: 391 gtggcttggtttggacaaagaagcaaagaaacttgtagttgagacaactgcaaa 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gtggcttggtttggacaaagaagcaaagaaacttgtagttgagacaactgcaaa 457