Jatropha Genome Database
- JcCB0539181.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0539181.10 - phase: 0
(324 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|237680931|gb|GO247122.1|GO247122 JcrME_RL0666 Expressed seque... 80 2e-15
gi|237680934|gb|GO247125.1|GO247125 JcrME_RL0669 Expressed seque... 80 2e-15
gi|268524003|gb|FM890689.1|FM890689 FM890689 Jatropha curcas emb... 48 6e-06
>gi|237680931|gb|GO247122.1|GO247122 JcrME_RL0666 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 684
Score = 79.8 bits (40), Expect = 2e-15
Identities = 178/224 (79%)
Strand = Plus / Plus
Query: 1 atgggggcttacagggcagacgatgattatgactacttattcaaggtggtacttattggt 60
|||| ||| ||||| |||||||||||||| ||||| ||||||||||||| | || ||
Sbjct: 136 atggcggcgtacagagcagacgatgattacgactatctattcaaggtggtgttaatcggc 195
Query: 61 gattccggcgttggaaaatcaaatcttttatcaagatttacgagaaatgaattctgtctt 120
|| || || || || ||||| ||||| | || |||| || |||| || ||| ||||
Sbjct: 196 gactctggagtcgggaaatcgaatctactctctcgattcactcgaaacgagttcagtctc 255
Query: 121 gaatctaaatctaccataggtgttgaattcgccacccgaagcatccatgtcgacgacaag 180
||||| |||||||| || || |||||||| |||||||| ||||| | ||||| ||||||
Sbjct: 256 gaatccaaatctactattggcgttgaatttgccacccgtagcattcgcgtcgatgacaag 315
Query: 181 gtcgtcaaggcccagatttgggacaccgctggtcaggaaaggta 224
|||| ||||| ||||||||||| ||||| || || ||||||||
Sbjct: 316 atcgtgaaggctcagatttgggataccgccggccaagaaaggta 359
>gi|237680934|gb|GO247125.1|GO247125 JcrME_RL0669 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 655
Score = 79.8 bits (40), Expect = 2e-15
Identities = 178/224 (79%)
Strand = Plus / Plus
Query: 1 atgggggcttacagggcagacgatgattatgactacttattcaaggtggtacttattggt 60
|||| ||| ||||| |||||||||||||| ||||| ||||||||||||| | || ||
Sbjct: 119 atggcggcgtacagagcagacgatgattacgactatctattcaaggtggtgttaatcggc 178
Query: 61 gattccggcgttggaaaatcaaatcttttatcaagatttacgagaaatgaattctgtctt 120
|| || || || || ||||| ||||| | || |||| || |||| || ||| ||||
Sbjct: 179 gactctggagtcgggaaatcgaatctactctctcgattcactcgaaacgagttcagtctc 238
Query: 121 gaatctaaatctaccataggtgttgaattcgccacccgaagcatccatgtcgacgacaag 180
||||| |||||||| || || |||||||| |||||||| ||||| | ||||| ||||||
Sbjct: 239 gaatccaaatctactattggcgttgaatttgccacccgtagcattcgcgtcgatgacaag 298
Query: 181 gtcgtcaaggcccagatttgggacaccgctggtcaggaaaggta 224
|||| ||||| ||||||||||| ||||| || || ||||||||
Sbjct: 299 atcgtgaaggctcagatttgggataccgccggccaagaaaggta 342
>gi|268524003|gb|FM890689.1|FM890689 FM890689 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_000608,
mRNA sequence
Length = 404
Score = 48.1 bits (24), Expect = 6e-06
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 169 gtcgacgacaaggtcgtcaaggcccagatttgggacaccgctggtcaggaaaggta 224
||||| |||||| |||| ||||| ||||||||||| ||||| || || ||||||||
Sbjct: 8 gtcgatgacaagatcgtgaaggctcagatttgggataccgccggccaagaaaggta 63