Jatropha Genome Database

JcCB0537831.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0537831.10 - phase: 1 /pseudo/partial
         (1427 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268521251|gb|FM891970.1|FM891970 FM891970 Jatropha curcas emb...   940   0.0  

>gi|268521251|gb|FM891970.1|FM891970 FM891970 Jatropha curcas embryo
            56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_002404,
            mRNA sequence
          Length = 514

 Score =  940 bits (474), Expect = 0.0
 Identities = 505/514 (98%), Gaps = 1/514 (0%)
 Strand = Plus / Plus

                                                                        
Query: 840  tttgatgaaacaggaaatgatgagactgaaggaagatcccagagaacagcttatgctaaa 899
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    tttgatgaaacaggaaatgatgagactgaaggaagatcccagagaacagcttatgctaaa 60

                                                                        
Query: 900  gaaactttcaaggaattggtgagcgcatactttgtagaagcaaagtggtttaatgagggg 959
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   gaaactttcaaggaataggtgagcgcatactttgtagaagcaaagtggtttaatgagggg 120

                                                                        
Query: 960  tatgtgccaccattcgaggagtacataagcaatggattagtgtcgagcacttacagtgta 1019
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  tatgtgccaccattcgaggagtacataagcaatggattagtgtcgagcacttacagtgta 180

                                                                        
Query: 1020 cttccagcagcttcctttattggaatggaaaacgttgttggaagcaaagagtacgaatgg 1079
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  cttccagcagcttcctttattggaatggaaaacgttgttggaagcaaagagtacgaatgg 240

                                                                        
Query: 1080 gtaaaagaaaatcctaaaattgttaatgcttccaagttaatttgccgtctgatggatgac 1139
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  gtaaaagaaaatcctaaaattgttaatgcttccaagttaatttgccgtctgatggatgac 300

                                                                        
Query: 1140 gtaacaacccacgagcatgagcaaaagagaggacactgtgcttcaggtgtcgaatgctac 1199
            |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 301  gtaacaacccacgagcatgagcaagagagaggacactgtgcttcaggtatcgaatgctac 360

                                                                        
Query: 1200 atgaaagagtatggtgtttcagaaaaggaggccattgatgagatccagaaaatg-tgtgc 1258
            ||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||
Sbjct: 361  atgaaagagtatggtgtttcacaaaaggtggccattgatgagatccagaaaatgttgtgc 420

                                                                        
Query: 1259 aaatgcctggaaggatatgaacgaagcatgcatgaagccaactgaggtgtccaccactct 1318
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 421  aaatgcctggaaggatatgaacgaagcatgcatgaagccaactgaggtgtccaccaacct 480

                                              
Query: 1319 tctcaagtattatgtcaatcttgcacgtgtcatt 1352
            ||||| ||||||||||||||||||||||||||||
Sbjct: 481  tctcacgtattatgtcaatcttgcacgtgtcatt 514