Jatropha Genome Database
- JcCB0532351.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0532351.10 - phase: 2 /partial
(963 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268522428|gb|FM894573.1|FM894573 FM894573 Jatropha curcas emb... 1033 0.0
gi|262091167|gb|GT228594.1|GT228594 JC159 Jatropha seeds from fr... 876 0.0
gi|268524674|gb|FM895372.1|FM895372 FM895372 Jatropha curcas emb... 569 e-162
gi|268521718|gb|FM894314.1|FM894314 FM894314 Jatropha curcas emb... 72 1e-12
gi|268523140|gb|FM894723.1|FM894723 FM894723 Jatropha curcas emb... 72 1e-12
>gi|268522428|gb|FM894573.1|FM894573 FM894573 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_000362,
mRNA sequence
Length = 521
Score = 1033 bits (521), Expect = 0.0
Identities = 521/521 (100%)
Strand = Plus / Plus
Query: 313 taagaatttaagcggtcttgttgaatggtatggaaagaacgccaagctacgtgaattggc 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taagaatttaagcggtcttgttgaatggtatggaaagaacgccaagctacgtgaattggc 60
Query: 373 taaccttgttgtagttggtggtgatagaagaaaggagtctaaagatcttgaagagcaagc 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 taaccttgttgtagttggtggtgatagaagaaaggagtctaaagatcttgaagagcaagc 120
Query: 433 tgaaatgaagaaaatgcatgctcttattgagcaatacaatttgaatggccagttcagatg 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgaaatgaagaaaatgcatgctcttattgagcaatacaatttgaatggccagttcagatg 180
Query: 493 gatttcttctcagatgaaccgagtgaggaatggggaactctatcggtacatttgtgacac 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gatttcttctcagatgaaccgagtgaggaatggggaactctatcggtacatttgtgacac 240
Query: 553 aaagggagtttttgtgcagcctgctttatatgaagcttttggcttgactgttgttgaggc 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaagggagtttttgtgcagcctgctttatatgaagcttttggcttgactgttgttgaggc 300
Query: 613 catgacttgtggtttgccaacttttgccacatgcaatggtggccctgctgagatcattgt 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 catgacttgtggtttgccaacttttgccacatgcaatggtggccctgctgagatcattgt 360
Query: 673 gcatggaaaatctggcttcaacattgatccttaccatggcgaacaggctgctcagcttct 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gcatggaaaatctggcttcaacattgatccttaccatggcgaacaggctgctcagcttct 420
Query: 733 tgtcgacttcttcgagaagtgcaaggtagatccctctcactgggacaaaatctcccaagg 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgtcgacttcttcgagaagtgcaaggtagatccctctcactgggacaaaatctcccaagg 480
Query: 793 aggtctgcaacgtatccaagagaagtatacctggcaaattt 833
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aggtctgcaacgtatccaagagaagtatacctggcaaattt 521
>gi|262091167|gb|GT228594.1|GT228594 JC159 Jatropha seeds from
fruits at three stages of maturation Jatropha curcas
cDNA clone PL01SE.A01.scf 5', mRNA sequence
Length = 580
Score = 876 bits (442), Expect = 0.0
Identities = 458/462 (99%), Gaps = 1/462 (0%)
Strand = Plus / Plus
Query: 1 cagtacattccaagaaattgctggaagcaaggacactgttggtcaatatgagagccacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 cagtacattccaagaaattgctggaagcaaggacactgttggtcaatatgagagccacac 178
Query: 61 agctttcacccttcctgggctctacagagtcgttcatggtattgatgtgtttgatcccaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 agctttcacccttcctgggctctacagagtcgttcatggtattgatgtgtttgatcccaa 238
Query: 121 attcaacattgtctcccctggtgctgacatgagcatatacttcgcctacaccgaggagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 attcaacattgtctcccctggtgctgacatgagcatatacttcgcctacaccgaggagaa 298
Query: 181 acgcaggttgactgctttccacccagaaattgaggagctgctctacagccaagttgagaa 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 299 acgcaggttgactgctttccacccagaaattgaggagctgctctacaaccaagttgagaa 358
Query: 241 cgaagaacacttatgcgtgctaaaggatcgcaacaagccaattattttcaccatggcaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 cgaagaacacttatgcgtgctaaaggatcgcaacaagccaattattttcaccatggcaag 418
Query: 301 gctggacagagttaagaatttaagcggtcttgttgaatggtatggaaagaacgcc-aagc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 419 gctggacagagttaagaatttaagcggtcttgttgaatggtatggaaagaacgccaaagc 478
Query: 360 tacgtgaattggctaaccttgttgtagttggtggtgatagaagaaaggagtctaaagatc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tacgtgaattggctaaccttgttgtagttggtggtgatagaagaaaggagtctaaagatc 538
Query: 420 ttgaagagcaagctgaaatgaagaaaatgcatgctcttattg 461
|||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 539 ttgaagagcaagctgacatgaagcaaatgcatgctcttattg 580
>gi|268524674|gb|FM895372.1|FM895372 FM895372 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002180,
mRNA sequence
Length = 598
Score = 569 bits (287), Expect = e-162
Identities = 296/299 (98%)
Strand = Plus / Minus
Query: 658 tgctgagatcattgtgcatggaaaatctggcttcaacattgatccttaccatggcgaaca 717
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 598 tgctgagatcattgtgcatggaaattctggcttcaacagtgatccttaccatggcgaaca 539
Query: 718 ggctgctcagcttcttgtcgacttcttcgagaagtgcaaggtagatccctctcactggga 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ggctgctcagcttcttgtcgacttcttcgagaagtgcaaggtagatccctctcactggga 479
Query: 778 caaaatctcccaaggaggtctgcaacgtatccaagagaagtatacctggcaaatttactc 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 caaaatctcccaaggaggtctgcaacgtatccaagagaagtatacctggcaaatttactc 419
Query: 838 tcaaaggctattgactctcactggtgtatatggcttctggaaacatgtatctaaactcga 897
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 418 tcaaaggctattgactctcactggtgtatatggcttctggcaacatgtatctaaactcga 359
Query: 898 ccgccgtgagagccggcgctaccttgagatgttctatgctctcaagtacaggaaattgg 956
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ccgccgtgagagccggcgctaccttgagatgttctatgctctcaagtacaggaaattgg 300
>gi|268521718|gb|FM894314.1|FM894314 FM894314 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_004634,
mRNA sequence
Length = 551
Score = 71.9 bits (36), Expect = 1e-12
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 37 tgttggtcaatatgagagccacacagctttcacccttcctgggctctacagagtcgttca 96
|||||| || ||||||||||| || ||||| || ||||||||||| || |||| |||||
Sbjct: 331 tgttggacagtatgagagccatactgcttttactcttcctgggctgtatcgagttgttca 390
Query: 97 tggtattgatgtgtttgatcccaa 120
||||||||| || |||||||||||
Sbjct: 391 tggtattgacgtttttgatcccaa 414
>gi|268523140|gb|FM894723.1|FM894723 FM894723 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_000567,
mRNA sequence
Length = 605
Score = 71.9 bits (36), Expect = 1e-12
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 37 tgttggtcaatatgagagccacacagctttcacccttcctgggctctacagagtcgttca 96
|||||| || ||||||||||| || ||||| || ||||||||||| || |||| |||||
Sbjct: 124 tgttggacagtatgagagccatactgcttttactcttcctgggctgtatcgagttgttca 183
Query: 97 tggtattgatgtgtttgatcccaa 120
||||||||| || |||||||||||
Sbjct: 184 tggtattgacgtttttgatcccaa 207