Jatropha Genome Database
- JcCB0498421.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0498421.10 - phase: 0 /partial
(288 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268521463|gb|FM894215.1|FM894215 FM894215 Jatropha curcas emb... 571 e-163
gi|268524171|gb|FM894850.1|FM894850 FM894850 Jatropha curcas emb... 571 e-163
gi|268524526|gb|FM895206.1|FM895206 FM895206 Jatropha curcas emb... 420 e-118
gi|262090823|gb|GT229181.1|GT229181 JC746 Jatropha seeds from fr... 48 5e-06
gi|268523555|gb|FM892088.1|FM892088 FM892088 Jatropha curcas emb... 48 5e-06
gi|268525178|gb|FM895820.1|FM895820 FM895820 Jatropha curcas emb... 48 5e-06
>gi|268521463|gb|FM894215.1|FM894215 FM894215 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_004515,
mRNA sequence
Length = 625
Score = 571 bits (288), Expect = e-163
Identities = 288/288 (100%)
Strand = Plus / Plus
Query: 1 atggccaaggaagtaagtgaagaaacgcaaactacccatgcaaaggattatgttgatcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 atggccaaggaagtaagtgaagaaacgcaaactacccatgcaaaggattatgttgatcca 135
Query: 61 ccacctgcgccactgatcgacatggctgaaatcaagctctggtctttctacagagcttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 ccacctgcgccactgatcgacatggctgaaatcaagctctggtctttctacagagcttta 195
Query: 121 atagctgagttcatagccactctccttttcctttacataactgtagccactgtaattggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 atagctgagttcatagccactctccttttcctttacataactgtagccactgtaattggc 255
Query: 181 tacaagaaacaaactgatccatgtggtggagttggtcttttgggcattgcatgggccttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tacaagaaacaaactgatccatgtggtggagttggtcttttgggcattgcatgggccttt 315
Query: 241 ggtggcatgatctttatccttgtttactgcactgccggtatatctggt 288
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ggtggcatgatctttatccttgtttactgcactgccggtatatctggt 363
>gi|268524171|gb|FM894850.1|FM894850 FM894850 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_000739,
mRNA sequence
Length = 491
Score = 571 bits (288), Expect = e-163
Identities = 288/288 (100%)
Strand = Plus / Plus
Query: 1 atggccaaggaagtaagtgaagaaacgcaaactacccatgcaaaggattatgttgatcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 atggccaaggaagtaagtgaagaaacgcaaactacccatgcaaaggattatgttgatcca 129
Query: 61 ccacctgcgccactgatcgacatggctgaaatcaagctctggtctttctacagagcttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 ccacctgcgccactgatcgacatggctgaaatcaagctctggtctttctacagagcttta 189
Query: 121 atagctgagttcatagccactctccttttcctttacataactgtagccactgtaattggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 atagctgagttcatagccactctccttttcctttacataactgtagccactgtaattggc 249
Query: 181 tacaagaaacaaactgatccatgtggtggagttggtcttttgggcattgcatgggccttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tacaagaaacaaactgatccatgtggtggagttggtcttttgggcattgcatgggccttt 309
Query: 241 ggtggcatgatctttatccttgtttactgcactgccggtatatctggt 288
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ggtggcatgatctttatccttgtttactgcactgccggtatatctggt 357
>gi|268524526|gb|FM895206.1|FM895206 FM895206 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_001988,
mRNA sequence
Length = 497
Score = 420 bits (212), Expect = e-118
Identities = 247/256 (96%), Gaps = 2/256 (0%)
Strand = Plus / Plus
Query: 1 atggccaaggaagtaagtgaagaaacgcaaactacccatgcaaaggattatgttgatcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 239 atggccaaggaagtaagtgaagaaacgcaaactacccatgcaaaggattatgtagatcca 298
Query: 61 ccacctgcgccactgatcgacatggctgaaatcaagctctggtcttt-ctacagagcttt 119
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 299 ccacctgcgccactgatcgacatggctgaaatcaagctctggtcattactacagagcttt 358
Query: 120 aatagctgagt-tcatagccactctccttttcctttacataactgtagccactgtaattg 178
||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 359 aatagctgagtatcatagccactctccttatccttaacataactgtagccactgtaattg 418
Query: 179 gctacaagaaacaaactgatccatgtggtggagttggtcttttgggcattgcatgggcct 238
|||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||
Sbjct: 419 gctacaagaaacaaactgatccatgtggtggagtaggtctatagggcattgcatgggcct 478
Query: 239 ttggtggcatgatctt 254
||||||||||||||||
Sbjct: 479 ttggtggcatgatctt 494
>gi|262090823|gb|GT229181.1|GT229181 JC746 Jatropha seeds from
fruits at three stages of maturation Jatropha curcas
cDNA clone PL18SE.A03.scf 5', mRNA sequence
Length = 581
Score = 48.1 bits (24), Expect = 5e-06
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 226 attgcatgggcctttggtggcatgatctttatccttgtttactgcactgccggtat 281
||||| |||||||||||||| ||||||||| ||||| ||||| ||||| |||||
Sbjct: 398 attgcttgggcctttggtggaatgatctttgcacttgtctactgtactgctggtat 453
>gi|268523555|gb|FM892088.1|FM892088 FM892088 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_002565,
mRNA sequence
Length = 454
Score = 48.1 bits (24), Expect = 5e-06
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 226 attgcatgggcctttggtggcatgatctttatccttgtttactgcactgccggtat 281
||||| |||||||||||||| ||||||||| ||||| ||||| ||||| |||||
Sbjct: 68 attgcttgggcctttggtggaatgatctttgcacttgtctactgtactgctggtat 123
>gi|268525178|gb|FM895820.1|FM895820 FM895820 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002815,
mRNA sequence
Length = 531
Score = 48.1 bits (24), Expect = 5e-06
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 226 attgcatgggcctttggtggcatgatctttatccttgtttactgcactgccggtat 281
||||| |||||||||||||| ||||||||| ||||| ||||| ||||| |||||
Sbjct: 84 attgcttgggcctttggtggaatgatctttgcacttgtctactgtactgctggtat 139