Jatropha Genome Database
- JcCB0492351.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0492351.10 + phase: 1 /pseudo/partial
(716 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268526422|gb|FM895276.1|FM895276 FM895276 Jatropha curcas emb... 946 0.0
gi|268522858|gb|FM896301.1|FM896301 FM896301 Jatropha curcas emb... 349 3e-96
gi|268517176|gb|FM893524.1|FM893524 FM893524 Jatropha curcas emb... 151 1e-36
gi|268517285|gb|FM887171.1|FM887171 FM887171 Jatropha curcas emb... 105 7e-23
gi|268521202|gb|FM891921.1|FM891921 FM891921 Jatropha curcas emb... 103 3e-22
>gi|268526422|gb|FM895276.1|FM895276 FM895276 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002076,
mRNA sequence
Length = 533
Score = 946 bits (477), Expect = 0.0
Identities = 484/485 (99%), Gaps = 1/485 (0%)
Strand = Plus / Plus
Query: 233 ttttaaagttaaactactcgctaacaaggacaaaccagctatcatcaacgttaatatagg 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttttaaagttaaactactcgctaacaaggacaaaccagctatcatcaacgttaatatagg 60
Query: 293 cacaactgtcaaaggagcagttgatgaccttgatcttgtaatacaaacgcttgaagaaag 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cacaactgtcaaaggagcagttgatgaccttgatcttgtaatacaaacgcttgaagaaag 120
Query: 353 tggatttacgcatgatcggttctacatccactgtgatggagcgttatttggacttatgat 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tggatttacgcatgatcggttctacatccactgtgatggagcgttatttggacttatgat 180
Query: 413 gcctttcgtcaagcgtgcaccaaaggtttctttcaagaagcctatcggaagtgtgagtgt 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gcctttcgtcaagcgtgcaccaaaggtttctttcaagaagcctatcggaagtgtgagtgt 240
Query: 473 ttctggtcacaagtttgttggctgtccaatgccatgcggtgttcagctaacaaggttgga 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttctggtcacaagtttgttggctgtccaatgccatgcggtgttcagctaacaaggttgga 300
Query: 533 acacattaatgttctctcaaggaacgtcgagtaccttgcttcaagggatgccacaatcat 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 acacattaatgttctctcaaggaacgtcgagtaccttgcttcaagggatgccacaatcat 360
Query: 593 ggggagccgcaatggtcacgctcctatcttcctttggtacaccctcaacagaaaaggtta 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggggagccgcaatggtcacgctcctatcttcctttggtacaccctcaacagaaaaggtta 420
Query: 653 cagaggattccagaaagaagtacagaaatgtctcagaaatgctcattac-tgaaggatcg 711
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 421 cagaggattccagaaagaagtacagaaatgtctcagaaatgctcattacttgaaggatcg 480
Query: 712 cctac 716
|||||
Sbjct: 481 cctac 485
>gi|268522858|gb|FM896301.1|FM896301 FM896301 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003493,
mRNA sequence
Length = 504
Score = 349 bits (176), Expect = 3e-96
Identities = 200/204 (98%), Gaps = 3/204 (1%)
Strand = Plus / Plus
Query: 516 cagctaacaaggttggaacacattaatgttctctcaaggaacgtcgagtaccttg-cttc 574
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 22 cagccaacaaggttggaacacattaatgttctctcaaggaacgtcgagtaccttgacttc 81
Query: 575 aaggg-atgccacaatcatggggagccgcaatggtcacgctcctatcttcctttggtaca 633
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 aaggggatgccacaatcatggggagccgcaatggtcacgctcctatcttcctttggtaca 141
Query: 634 ccctcaacagaaaaggttacagaggattccagaaagaagtacagaaatgtctcagaaatg 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 ccctcaacagaaaaggttacagaggattccagaaagaagtacagaaatgtctcagaaatg 201
Query: 694 ctcattac-tgaaggatcgcctac 716
|||||||| |||||||||||||||
Sbjct: 202 ctcattacttgaaggatcgcctac 225
Score = 61.9 bits (31), Expect = 9e-10
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 487 ttgttggctgtccaatgccatgcggtgttca 517
|||||||||||||||||||||||||||||||
Sbjct: 31 ttgttggctgtccaatgccatgcggtgttca 1
>gi|268517176|gb|FM893524.1|FM893524 FM893524 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_004369,
mRNA sequence
Length = 220
Score = 151 bits (76), Expect = 1e-36
Identities = 83/84 (98%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 634 ccctcaacagaaaaggttacagaggattccagaaagaagtacagaaatgtctcagaaatg 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 ccctcaacagaaaaggttacagaggattccagaaagaagtacagaaatgtctcagaaatg 63
Query: 694 ctcattac-tgaaggatcgcctac 716
|||||||| |||||||||||||||
Sbjct: 64 ctcattacttgaaggatcgcctac 87
>gi|268517285|gb|FM887171.1|FM887171 FM887171 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_000281,
mRNA sequence
Length = 447
Score = 105 bits (53), Expect = 7e-23
Identities = 60/61 (98%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 657 ggattccagaaagaagtacagaaatgtctcagaaatgctcattac-tgaaggatcgccta 715
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 ggattccagaaagaagtacagaaatgtctcagaaatgctcattacttgaaggatcgccta 60
Query: 716 c 716
|
Sbjct: 61 c 61
>gi|268521202|gb|FM891921.1|FM891921 FM891921 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_002335,
mRNA sequence
Length = 443
Score = 103 bits (52), Expect = 3e-22
Identities = 65/68 (95%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 650 ttacagaggattccagaaagaagtacagaaatgtctcagaaatgctcattac-tgaagga 708
|||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 443 ttacagtggattccagaaagaattacagaaatgtctcagaaatgctcattacttgaagga 384
Query: 709 tcgcctac 716
||||||||
Sbjct: 383 tcgcctac 376