Jatropha Genome Database

JcCB0488391.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0488391.10 - phase: 0 /partial
         (334 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268523173|gb|FM893939.1|FM893939 FM893939 Jatropha curcas emb...   293   6e-80

>gi|268523173|gb|FM893939.1|FM893939 FM893939 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_004887,
           mRNA sequence
          Length = 567

 Score =  293 bits (148), Expect = 6e-80
 Identities = 182/199 (91%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtttatgacaagatttattgggagaaccctcttttctgctgctaaatctgaaacctnn 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 369 atgtttatgacaagatttattgggagaaccctcttttctgctgctaaatctgaaacctct 428

                                                                       
Query: 61  nnnnnnnnnnnnnnnacgattcagtttgcacgtaaccctctcgaggagttctttgaagca 120
                          |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gctgctgctgctgctacgattcagtttgcacgtaaccctctcgaggagttctttgaagca 488

                                                                       
Query: 121 gatagaagccaggatgaggacaacaaaattttctatggtcgaagttggaaagcttctgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gatagaagccaggatgaggacaacaaaattttctatggtcgaagttggaaagcttctgaa 548

                              
Query: 181 ctacgcctgaagtcttggg 199
           |||||||||||||||||||
Sbjct: 549 ctacgcctgaagtcttggg 567