Jatropha Genome Database

JcCB0482031.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0482031.10 - phase: 2 /partial
         (397 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268517582|gb|FM889293.1|FM889293 FM889293 Jatropha curcas emb...    68   8e-12
gi|268519098|gb|FM887565.1|FM887565 FM887565 Jatropha curcas emb...    58   8e-09

>gi|268517582|gb|FM889293.1|FM889293 FM889293 Jatropha curcas
          embryo 35-55 (DAF) Jatropha curcas cDNA clone
          rjcfea0_002919, mRNA sequence
          Length = 437

 Score = 67.9 bits (34), Expect = 8e-12
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                      
Query: 11 caagttttgattcttgatcacgaagcagttggtgggattgtaactcattgtggatggaat 70
          ||||| ||||||||||| || ||||||||||| ||  |||| ||||||||||||||||||
Sbjct: 63 caagtgttgattcttgaacatgaagcagttggaggatttgtgactcattgtggatggaat 4

            
Query: 71 tc 72
          ||
Sbjct: 3  tc 2


>gi|268519098|gb|FM887565.1|FM887565 FM887565 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_000792,
           mRNA sequence
          Length = 274

 Score = 58.0 bits (29), Expect = 8e-09
 Identities = 62/73 (84%)
 Strand = Plus / Plus

                                                                       
Query: 278 gaggaaattagaaacagagcaaaaaagattggagaaatggcaagaaaagctgttgaagat 337
           ||||| || |||| ||||||||  ||| ||||||| ||||||||| ||||||||||||| 
Sbjct: 1   gaggagatgagaagcagagcaaggaagcttggagagatggcaagacaagctgttgaagaa 60

                        
Query: 338 gggggctcttctt 350
           || || |||||||
Sbjct: 61  ggtggatcttctt 73