Jatropha Genome Database

JcCB0470521.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0470521.10 + phase: 0 
         (261 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268525702|gb|FM890957.1|FM890957 FM890957 Jatropha curcas emb...   143   1e-34
gi|262091241|gb|GT228668.1|GT228668 JC233 Jatropha seeds from fr...   107   6e-24
gi|268517537|gb|FM889248.1|FM889248 FM889248 Jatropha curcas emb...    60   1e-09

>gi|268525702|gb|FM890957.1|FM890957 FM890957 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_000928,
           mRNA sequence
          Length = 483

 Score =  143 bits (72), Expect = 1e-34
 Identities = 141/164 (85%)
 Strand = Plus / Plus

                                                                       
Query: 49  ttcttcattgaccatcctggtgcagcgcccattactactgcgcagggagaggaactgaga 108
           |||||||| || || |||||||||| |||||| || || || ||||| ||||||||||||
Sbjct: 80  ttcttcatagatcaccctggtgcagtgcccatcaccacagctcagggggaggaactgaga 139

                                                                       
Query: 109 aaacttattggagctcctgcctacattgagtgtagctcaaaaacacagcagaatgtgaag 168
           || || |||||||||||||  |||||||||||||| || ||||| |||||||||||||| 
Sbjct: 140 aagctaattggagctcctgtttacattgagtgtagttctaaaactcagcagaatgtgaaa 199

                                                       
Query: 169 ggagtttttgatgcagccatcaaggtggttctgcagcccccaaa 212
           | ||| |||||||||||||| || |||||||| ||||| |||||
Sbjct: 200 gcagtctttgatgcagccattaaagtggttctccagccaccaaa 243


>gi|262091241|gb|GT228668.1|GT228668 JC233 Jatropha seeds from
           fruits at three stages of maturation Jatropha curcas
           cDNA clone PL04SE.F07.scf 5', mRNA sequence
          Length = 552

 Score =  107 bits (54), Expect = 6e-24
 Identities = 105/122 (86%)
 Strand = Plus / Minus

                                                                       
Query: 91  cagggagaggaactgagaaaacttattggagctcctgcctacattgagtgtagctcaaaa 150
           ||||| |||||||||||||| || |||||||||||||   ||||||||||||| || |||
Sbjct: 533 cagggggaggaactgagaaagctaattggagctcctgttaacattgagtgtagttctaaa 474

                                                                       
Query: 151 acacagcagaatgtgaagggagtttttgatgcagccatcaaggtggttctgcagccccca 210
           || |||| ||||||||| | ||| |||||||||||||| || |||||||| ||||| |||
Sbjct: 473 actcagctgaatgtgaaagcagtctttgatgcagccattaaagtggttctccagccacca 414

             
Query: 211 aa 212
           ||
Sbjct: 413 aa 412


>gi|268517537|gb|FM889248.1|FM889248 FM889248 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002854,
           mRNA sequence
          Length = 327

 Score = 60.0 bits (30), Expect = 1e-09
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                       
Query: 130 tacattgagtgtagctcaaaaacacagcagaatgtgaagggagtttttgatgcagccatc 189
           |||| |||||| |||||||| || || ||||||||||||| ||||||||| ||||| |||
Sbjct: 57  tacagtgagtgcagctcaaagactcaacagaatgtgaaggcagtttttgacgcagcaatc 116

             
Query: 190 aa 191
           ||
Sbjct: 117 aa 118