Jatropha Genome Database

JcCB0465031.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0465031.10 - phase: 1 /pseudo/partial
         (756 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268518559|gb|FM888814.1|FM888814 FM888814 Jatropha curcas emb...   971   0.0  

>gi|268518559|gb|FM888814.1|FM888814 FM888814 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002307,
           mRNA sequence
          Length = 510

 Score =  971 bits (490), Expect = 0.0
 Identities = 507/510 (99%), Gaps = 2/510 (0%)
 Strand = Plus / Plus

                                                                       
Query: 129 ttattact-taggagaagtgttgaaattgcatgcgaagcaagagaaatttattatgacaa 187
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ttattactataggagaagtgttgaaattgcatgcgaagcaagagaaatttattatgacaa 60

                                                                       
Query: 188 -ttgttcaaaaagttcatgggattttatggaaagtggaaacgtaacaaggcgtccaattc 246
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gttgttcaaaaagttcatgggattttatggaaagtggaaacgtaacaaggcgtccaattc 120

                                                                       
Query: 247 tggtcgctgcctccattggcagctatggtgcttatttggctgatggttctgagtatagtg 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tggtcgctgcctccattggcagctatggtgcttatttggctgatggttctgagtatagtg 180

                                                                       
Query: 307 gcaactatggagattcagtttctctccaaacactgaaagattttcacaggagaaggttac 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gcaactatggagattcagtttctctccaaacactgaaagattttcacaggagaaggttac 240

                                                                       
Query: 367 aaattctagccaaagcaggagctgacataattgcatttgagacaattcctaataagcttg 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaattctagccaaagcaggagctgacataattgcatttgagacaattcctaataagcttg 300

                                                                       
Query: 427 aagcaaaggcatatgctgagctgcttgaagaagaagacataaaaattccagcttggttct 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aagcaaaggcatatgctgagctgcttgaagaagaagacataaaaattccagcttggttct 360

                                                                       
Query: 487 ctttcaattccaaggatggaattaacgtagtcagtggtgattctatctcagaatgtgctt 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctttcaattccaaggatggaattaacgtagtcagtggtgattctatctcagaatgtgctt 420

                                                                       
Query: 547 ccattgcagattcctgcaagcaactagttgctgtaggaatcaactgtactcctcctagat 606
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 421 ccattgcagattcctgcaagcaactagttgctgtaggaatcaactgtactcctcctaaat 480

                                         
Query: 607 ttattcgcgaacttattctctccattgcca 636
           ||||||||||||||||||||||||||||||
Sbjct: 481 ttattcgcgaacttattctctccattgcca 510