Jatropha Genome Database

JcCB0464111.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0464111.10 - phase: 0 /partial
         (183 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268521523|gb|FM896733.1|FM896733 FM896733 Jatropha curcas emb...   214   2e-56

>gi|268521523|gb|FM896733.1|FM896733 FM896733 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_004023,
           mRNA sequence
          Length = 462

 Score =  214 bits (108), Expect = 2e-56
 Identities = 126/131 (96%), Gaps = 1/131 (0%)
 Strand = Plus / Minus

                                                                       
Query: 54  ttctgtgaatggaggaaactgcaaagagttggctgcacaaccagatgttgatggattttt 113
           ||||||||||||||||||| |||||||| |||| |||||||||||||| |||||||||||
Sbjct: 361 ttctgtgaatggaggaaacggcaaagaggtggcngcacaaccagatgtggatggattttt 302

                                                                       
Query: 114 -ggtcggcggagcttctttgaagccggagttcattgacataatcaagtctgctactgtca 172
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tggtcggcggagcttctttgaagccggagttcattgacataatcaagtctgctactgtca 242

                      
Query: 173 agaagagcgat 183
           |||||||||||
Sbjct: 241 agaagagcgat 231